Browse Element(s) Details


OsAffx.27244.1.S1_x_at

Description tigr:9633.m03711
TID=OsAffx.27244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dna replication licensing factor mcm3 homolog (replication originactivator) (roa protein) (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3985011/11DNA replication licensing factor MCM3 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27244.1.S1_x_at--1105--8271Chr05:23339550..23339574 (25 bp)
GGCATCTGATCATATTGCAACTTCA
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--86--9031Chr05:23339565..23339589 (25 bp)
TGCAACTTCATATGCTGAGCTCAGG
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--647--2851Chr05:23339695..23339718 (24 bp)
AAGTCTGGTGGAGGTACACTTCCGA
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--741--9851Chr05:23339708..23339732 (25 bp)
TACACTTCCGATCACAGCGAGGACA
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--349--9751Chr05:23339743..23339767 (25 bp)
TAATTCGTCTATCTACTGCTCATGC
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--393--2391Chr05:23340004..23340028 (25 bp)
AAACTGACGTTGAAGCTGCACTGCA
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--1079--4751Chr05:23340018..23340042 (25 bp)
GCTGCACTGCAAGTTCTGAATTTTG
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--190--5331Chr05:23340659..23340681 (23 bp)
GAAGTTCTGGAAACGACCCAATGGA
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--153--911Chr05:23340846..23340870 (25 bp)
AGGCGATTCTTGGTCAGCATGTGTT
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--1102--771Chr05:23340864..23340888 (25 bp)
ATGTGTTGGCAAATCATCTCGATCA
LOC_Os05g39850
OsAffx.27244.1.S1_x_at--567--8251Chr05:23340928..23340952 (25 bp)
GGCAGCTGCACCTTACAATAGACGT
LOC_Os05g39850
Target Sequence 
GGCATCTGATCATATTGCAACTTCATATGCTGAGCTCAGGGATGGTGGTGCAAATGCAAAGTCTGGTGGAGGTACACTTC
CGATCACAGCGAGGACACTGGAAACCATAATTCGTCTATCTACTGCTCATGCCAAGATGAAATTGAGACATGAGGTTCTA
AAAACTGACGTTGAAGCTGCACTGCAAGTTCTGAATTTTGCAATATACCACAAAGAGTTAACTGAGATGGAAGAGCGTGA
ACAGAGAGAGATGGAAATGAAACAACAAGCTGATCATGATGCAGGTGCAAGTGGTGGTAATGCAGATGAGCATAGAAGTT
CTGGAAACGACCCAATGGATGTGGATGTAGGAAATGCATCGAATGATCAGGATGTTCCTGCGGAGAGAATTGAAGCATTT
GAGGCGATTCTTGGTCAGCATGTGTTGGCAAATCATCTCGATCAAATATCAATTGACGAAATTGAGCAAACTGTTAATAG
AGAGGCAGCTGCACCTTACAATAGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27244.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis