Browse Element(s) Details


OsAffx.27245.1.S1_at

Description tigr:9633.m03718
TID=OsAffx.27245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g399107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39930Os.6671.1.S1_a_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39930Os.6671.2.S1_x_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39940OsAffx.4565.1.S1_at11/115+23390051..23390494Zinc finger, C3HC4 type family protein
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27245.1.S1_at--324--9991Chr05:23367900..23367924 (25 bp)
TAGCCATCATTGTCCGTGGGCCCAA
NONE
OsAffx.27245.1.S1_at--422--7551Chr05:23367917..23367941 (25 bp)
GGGCCCAACACATTTACGACTCCAA
NONE
OsAffx.27245.1.S1_at--94--10731Chr05:23367956..23367980 (25 bp)
TTGCTGCGCGTCACCTGAAGATGGG
NONE
OsAffx.27245.1.S1_at--284--9131Chr05:23368074..23368098 (25 bp)
TGCTGGAGCTGATTGTGGCAACGCT
LOC_Os05g39910
OsAffx.27245.1.S1_at--114--8671Chr05:23368087..23368111 (25 bp)
TGTGGCAACGCTGTTGCTGATGCTC
LOC_Os05g39910
OsAffx.27245.1.S1_at--785--10711Chr05:23368100..23368124 (25 bp)
TTGCTGATGCTCTTAAACTCCGTGC
LOC_Os05g39910
OsAffx.27245.1.S1_at--170--2551Chr05:23368115..23368139 (25 bp)
AACTCCGTGCTAGTGTTTGTTGTCG
LOC_Os05g39910
OsAffx.27245.1.S1_at--593--10071Chr05:23368125..23368149 (25 bp)
TAGTGTTTGTTGTCGTTGCAGCGTC
LOC_Os05g39910
OsAffx.27245.1.S1_at--778--7231NONE
GTCGCTGCTGGCAGCCAGAACATTA
NONE
OsAffx.27245.1.S1_at--255--1131Chr05:23369306..23369330 (25 bp)
AAATTTGAACTCAGAACCAGGCAAG
LOC_Os05g39910
OsAffx.27245.1.S1_at--352--5431Chr05:23369330..23369354 (25 bp)
GAAGCCAAGAACACTCTGAACACCT
LOC_Os05g39910
Target Sequence 
TAGCCATCATTGTCCGTGGGCCCAACACATTTACGACTCCAACCTCTCCATGCCACTTGCTGCGCGTCACCTGAAGATGG
GAAGAAAGGTGTCGATGGCGAAGGGTGTGCCCGCGGTTTGGGAGGGGGAGGGGGTCAATTCTGGCACTGGCAGGGCGTAC
GGCGACGGGGATGGTGCTGGAGCTGATTGTGGCAACGCTGTTGCTGATGCTCTTAAACTCCGTGCTAGTGTTTGTTGTCG
TTGCAGCGTCGCTGCTGGCAGCCAGAACATTACCCCGTTTCCCGATCTAAAATTTGAACTCAGAACCAGGCAAGAAGCCA
AGAACACTCTGAACACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis