Browse Element(s) Details


OsAffx.27250.2.S1_at

Description tigr:9633.m03735
TID=OsAffx.27250.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4005011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed
LOC_Os05g40070OsAffx.15035.1.S1_at11/115+23453168..23455737WRKY DNA binding domain containing protein
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27250.2.S1_at--385--6111Chr05:23443456..23443480 (25 bp)
GAGTCCTCAGCAGAGAGATCGGTTT
LOC_Os05g40050
OsAffx.27250.2.S1_at--639--10271Chr05:23443495..23443519 (25 bp)
TTTGACATAATAATCGGCGTAGCCC
LOC_Os05g40050
OsAffx.27250.2.S1_at--1137--7651Chr05:23443546..23443570 (25 bp)
GGGATAATCCACTATAATCTGAAGT
LOC_Os05g40050
OsAffx.27250.2.S1_at--1123--9071Chr05:23443583..23443607 (25 bp)
TGCTAGATAGCAACGGCGAGCCAAG
LOC_Os05g40050
OsAffx.27250.2.S1_at--156--4391Chr05:23443602..23443626 (25 bp)
GCCAAGGGTTGGTGACTATGGCCTT
LOC_Os05g40050
OsAffx.27250.2.S1_at--155--5711Chr05:23443615..23443639 (25 bp)
GACTATGGCCTTGTGAAGCTGCTGC
LOC_Os05g40050
OsAffx.27250.2.S1_at--143--5411Chr05:23443629..23443653 (25 bp)
GAAGCTGCTGCCTATGCTGGATCGC
LOC_Os05g40050
OsAffx.27250.2.S1_at--1102--8551Chr05:23443646..23443670 (25 bp)
TGGATCGCTACGTGCTGAGCAGCAA
LOC_Os05g40050
OsAffx.27250.2.S1_at--3--10531Chr05:23443673..23443697 (25 bp)
TTCAGAGCGCGCTAGGGTACATGGC
LOC_Os05g40050
OsAffx.27250.2.S1_at--1063--4551Chr05:23443696..23443720 (25 bp)
GCGCCGGAGTTCACATGCAGGACAG
LOC_Os05g40050
OsAffx.27250.2.S1_at--238--1231Chr05:23443764..23443788 (25 bp)
AGTTCTTGAGATCTTGACAGGCAGG
LOC_Os05g40050
Target Sequence 
GAGTCCTCAGCAGAGAGATCGGTTTCATGGATGGAAAGGTTTGACATAATAATCGGCGTAGCCCGAGCCCTTGCGCACTT
GCACCGCCATGGGATAATCCACTATAATCTGAAGTCAAGCAATGTCTTGCTAGATAGCAACGGCGAGCCAAGGGTTGGTG
ACTATGGCCTTGTGAAGCTGCTGCCTATGCTGGATCGCTACGTGCTGAGCAGCAAGATTCAGAGCGCGCTAGGGTACATG
GCGCCGGAGTTCACATGCAGGACAGTCAATGTCACAGAGAAGTGCGACGTCTATGGTTTCGGGGTGATAGTTCTTGAGAT
CTTGACAGGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27250.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis