Browse Element(s) Details


OsAffx.27250.4.S1_s_at

Description tigr:9630.m05009
TID=OsAffx.27250.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0725011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os02g5105011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein
LOC_Os05g07290Os.27639.1.S1_x_at8/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290OsAffx.8980.1.S1_at6/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.53731.1.S1_at3/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.2987.3.S1_x_at1/115+3839426..3844772transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27250.4.S1_s_at--700--9473Chr05:3815394..3815418 (25 bp)
TCTGTCTCCGCTCCAGTGGGATCGA
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--231--7172Chr05:3815397..3815421 (25 bp)
GTCTCCGCTCCAGTGGGATCGACTG
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--161--4792Chr05:3815403..3815427 (25 bp)
GCTCCAGTGGGATCGACTGGATGTT
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--998--4093Chr05:3815416..3815440 (25 bp)
CGACTGGATGTTGGCTGGATCGAAT
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--45--8493Chr05:3815427..3815451 (25 bp)
TGGCTGGATCGAATATAACATGTTC
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--517--5233Chr05:3815437..3815461 (25 bp)
GAATATAACATGTTCGTGTGGCTCA
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--1101--2493Chr05:3815443..3815467 (25 bp)
AACATGTTCGTGTGGCTCAAACCTC
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--714--732Chr05:3815446..3815470 (25 bp)
ATGTTCGTGTGGCTCAAACCTCAAA
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--279--6712Chr05:3815448..3815471 (24 bp)
GTTCGTGTGGCTCAAACCTCAAAGA
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--1140--7532Chr05:3815454..3815551 (25 bp)
GTGGCTCAAACCTCAAAGAGCATTT
LOC_Os05g07250
OsAffx.27250.4.S1_s_at--52--4812Chr05:3815561..3815585 (25 bp)
GCTCGAGGTGATGCAGGCTGAAGCC
LOC_Os05g07250
Target Sequence 
TCTGTCTCCGCTCCAGTGGGATCGACTGGATGTTGGCTGGATCGAATATAACATGTTCGTGTGGCTCAAACCTCAAAGAG
CATTTTACGAAGCTGCTCGAGGTGATGCAGGCTGAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27250.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis