Browse Element(s) Details


OsAffx.27289.1.S1_at

Description tigr:9633.m04005
TID=OsAffx.27289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4311011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein
LOC_Os05g43150OsAffx.25962.1.S1_at11/115+24963176..24968921transposon protein, putative, Mutator sub-class
LOC_Os05g43170Os.28096.1.S1_at11/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43170Os.18169.1.S1_at1/115+24971502..24975853Calreticulin-3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27289.1.S1_at--910--6151Chr05:24947892..24947916 (25 bp)
GAGGTACACCCATCACTCAGTGTAA
LOC_Os05g43110
OsAffx.27289.1.S1_at--1056--7051Chr05:24947871..24947895 (25 bp)
GTAATGAGATTTGCACCGATCCAGC
LOC_Os05g43110
OsAffx.27289.1.S1_at--74--9931Chr05:24947532..24947854 (25 bp)
TACTGGTACCTCACGAGTCTCATCA
LOC_Os05g43110
OsAffx.27289.1.S1_at--404--2791Chr05:24947372..24947396 (25 bp)
AAGAGGCACAACACGCTGCTTCGCG
LOC_Os05g43110
OsAffx.27289.1.S1_at--633--9511Chr05:24947343..24947367 (25 bp)
TCTCGTCAGGCTCAGGCGCAAGTAC
LOC_Os05g43110
OsAffx.27289.1.S1_at--849--5411Chr05:24946809..24947285 (25 bp)
GAACCTCGCCGATTTGGATTCGGTG
LOC_Os05g43110
OsAffx.27289.1.S1_at--1059--6571Chr05:24946793..24946817 (25 bp)
GATTCGGTGCCGATGGAGTTCTCAA
LOC_Os05g43110
OsAffx.27289.1.S1_at--907--3891Chr05:24946762..24946786 (25 bp)
CTGTGGCACTGGTGGCGTGTATAAC
LOC_Os05g43110
OsAffx.27289.1.S1_at--591--7431Chr05:24946746..24946770 (25 bp)
GTGTATAACTGGAACGCAAGCGCTA
LOC_Os05g43110
OsAffx.27289.1.S1_at--9--2491Chr05:24946684..24946708 (25 bp)
AACAGCATCAGTGTCCTGGGACGGG
LOC_Os05g43110
OsAffx.27289.1.S1_at--859--4711Chr05:24946644..24946668 (25 bp)
GCTGTCTACCGATATGTTGCCAAGG
LOC_Os05g43110
Target Sequence 
GAGGTACACCCATCACTCAGTGTAATGAGATTTGCACCGATCCAGCAAAAAGTACCTCGAAGTACTGGTACCTCACGAGT
CTCATCAACCAAGGCGCGGTTTATGTGGTCGTGCCGGGGAACCCACCAACAGGGTGTGCACCAGCACTTCACGCAACGAG
TGAGCCCCAACAGGACGGACTACGATGGCCTCGGATGCCTGCGTGCCATCAACAGCGTGGCCAAGAGGCACAACACGCTG
CTTCGCGCAGCTCTCGTCAGGCTCAGGCGCAAGTACCCTCATGCCAAGATCATCTTCGCCGACTTCTACCAACCCATCAT
TCGAGTCACCCAAGAACCTCGCCGATTTGGATTCGGTGCCGATGGAGTTCTCAAGGCTTGCTGTGGCACTGGTGGCGTGT
ATAACTGGAACGCAAGCGCTACCTGCGCCATGCCTGGAGTGGTCGCTTGCAAGAATCCAACAGCATCAGTGTCCTGGGAC
GGGATTCACTACACGGAGGCTGTCTACCGATATGTTGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis