Browse Element(s) Details


OsAffx.27305.1.S1_at

Description tigr:9633.m04143
TID=OsAffx.27305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4437010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27305.1.S1_at--1130--9951Chr05:25735254..25735278 (25 bp)
TACCGCATGATCTATTGGAACAGGC
LOC_Os05g44370
OsAffx.27305.1.S1_at--1154--4751Chr05:25735295..25735319 (25 bp)
GCTGCAGCTGCACCCAATGTGGAAA
LOC_Os05g44370
OsAffx.27305.1.S1_at--1021--5551Chr05:25735316..25735340 (25 bp)
GAAAGCGCCTATCAGTTGCTGTGAA
LOC_Os05g44370
OsAffx.27305.1.S1_at--177--8231Chr05:25735347..25735371 (25 bp)
GGCAATCCTTTTGCTATTGACAATA
LOC_Os05g44370
OsAffx.27305.1.S1_at--446--8291NONE
GGCATTCAGCCAGATCTTTGATGTT
NONE
OsAffx.27305.1.S1_at--602--671Chr05:25735697..25735721 (25 bp)
ATGAAAGTCGCTGTCACGCATTTGT
LOC_Os05g44370
OsAffx.27305.1.S1_at--996--6631Chr05:25735747..25735771 (25 bp)
GTTGTTCTTTCAGATCCAGTTGCAG
LOC_Os05g44370
OsAffx.27305.1.S1_at--227--2551Chr05:25735835..25735859 (25 bp)
AACTCTGGCCAGATTTTTCGCTTGC
LOC_Os05g44370
OsAffx.27305.1.S1_at--843--6431Chr05:25735981..25736005 (25 bp)
GATCAGGCATCACTTATGACTCTAA
LOC_Os05g44370
OsAffx.27305.1.S1_at--514--1911Chr05:25736015..25736039 (25 bp)
ACGGTGCCCTGGAGTTCGTCAGAAG
LOC_Os05g44370
OsAffx.27305.1.S1_at--804--6711Chr05:25736028..25736052 (25 bp)
GTTCGTCAGAAGTGCATTACCAGAT
LOC_Os05g44370
Target Sequence 
TACCGCATGATCTATTGGAACAGGCACAAAGAGCTGCTGCAGCTGCAGCTGCACCCAATGTGGAAAGCGCCTATCAGTTG
CTGTGAACAAGAAGGCAATCCTTTTGCTATTGACAATAAGAATGTTGGCTTGGCATTCAGCCAGATCTTTGATGTTATCC
CTTGCCCTTCATGCATTGCAATGTGGGACAATGAAAGTCGCTGTCACGCATTTGTGGTCGAGCTTCAGAGGATGTTGTGT
GTTGTTCTTTCAGATCCAGTTGCAGATGAGTTAGATATATGGAAGTGGGATCATGGTCTGTGGACTAGAGCATACACAAT
CAATTTAAAACTCTGGCCAGATTTTTCGCTTGCGACAAATGTTGTAGTGCCTCTCGCAGTTGATCCAATAGATGGAAGGG
TTCTACTGAATACTGGGAGGAAGCTTGGTTTATATAATCCATTTAATCAAGCGATTGAAAACTTGTATGCACTTGATCAG
GCATCACTTATGACTCTAAAGTGCAGCGACGGTGCCCTGGAGTTCGTCAGAAGTGCATTACCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis