Browse Element(s) Details


OsAffx.27321.1.S1_at

Description tigr:9633.m04257
TID=OsAffx.27321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4543011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0008356biological_processasymmetric cell division
GO:0010103biological_processstomatal complex morphogenesis
GO:0031225cellular_componentanchored to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004872molecular_functionreceptor activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27321.1.S1_at--593--8311Chr05:26274139..26274163 (25 bp)
GGCTCAAGCGGATGTACCACCTCAA
LOC_Os05g45430
OsAffx.27321.1.S1_at--80--3371Chr05:26273922..26273946 (25 bp)
CACCGACGTACTATCAGTTGGCACA
LOC_Os05g45430
OsAffx.27321.1.S1_at--343--1251Chr05:26273907..26273931 (25 bp)
AGTTGGCACATTGTTCAGGCGAGAT
LOC_Os05g45430
OsAffx.27321.1.S1_at--220--6031Chr05:26273887..26273911 (25 bp)
GAGATGGACAACTCTGGCTCGCCGG
LOC_Os05g45430
OsAffx.27321.1.S1_at--1129--4691Chr05:26273396..26273887 (25 bp)
GCGGCCGCTGCCTTATGGTAACTGG
LOC_Os05g45430
OsAffx.27321.1.S1_at--688--9811Chr05:26273378..26273402 (25 bp)
TAACTGGCTGTGATTTGTGCGTGGC
LOC_Os05g45430
OsAffx.27321.1.S1_at--127--351Chr05:26273343..26273367 (25 bp)
ATAAATCCGGCTGCGCCTGCAATTT
LOC_Os05g45430
OsAffx.27321.1.S1_at--880--10731Chr05:26273320..26273344 (25 bp)
TTGCAAGCAGTTTTCAGGCACTCTG
LOC_Os05g45430
OsAffx.27321.1.S1_at--53--3611Chr05:26273271..26273295 (25 bp)
CATTGCTTGCCGCTGTATAATCCAA
LOC_Os05g45430
OsAffx.27321.1.S1_at--496--3031Chr05:26273253..26273277 (25 bp)
AATCCAATGAGTGTTATGCCCCTCA
LOC_Os05g45430
OsAffx.27321.1.S1_at--411--571Chr05:26273238..26273262 (25 bp)
ATGCCCCTCATTGCCTTAAGTAAGG
LOC_Os05g45430
Target Sequence 
GGCTCAAGCGGATGTACCACCTCAACCTGAGCAAGAACGGGCTGGACGGCGTCGTGCCGTTCGACGGCGCGTTCCTCAGG
CGCCTCGGCCGGAACCTCGACCTCAGCGGCAACCCGGGGCTGTGCGTCGACGGCCGCGCCGTCTTGCAGGCCGACGTCGG
CGTCGGCGTCTGCCGCCGCGCCGGCGACGGCGGGGACATCGCCTCCGTGTCCGCCGCCACCGACGTACTATCAGTTGGCA
CATTGTTCAGGCGAGATGGACAACTCTGGCTCGCCGGCGGCCGCTGCCTTATGGTAACTGGCTGTGATTTGTGCGTGGCC
GATCTGGCCATAAATCCGGCTGCGCCTGCAATTTGCAAGCAGTTTTCAGGCACTCTGCAGCCTGAGCTCTGCCCTGCTTT
TCATTGCTTGCCGCTGTATAATCCAATGAGTGTTATGCCCCTCATTGCCTTAAGTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis