Browse Element(s) Details


OsAffx.27335.1.S1_x_at

Description tigr:9633.m04317
TID=OsAffx.27335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to myosin heavy chain PCR43 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4603011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46010Os.14919.1.S1_at4/115+26586138..26590038hypothetical protein
LOC_Os05g46010OsAffx.29313.1.S1_at1/115+26586138..26590038hypothetical protein
LOC_Os05g46020Os.8961.1.S1_s_at11/115+26599203..26600883WRKY DNA binding domain containing protein, expressed
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g46050Os.54851.1.S1_at11/115+26631240..26632756F-box domain containing protein, expressed
LOC_Os05g46060OsAffx.4632.2.S1_at11/115+26633993..26635219F-box domain containing protein
LOC_Os05g46070OsAffx.1407.1.S1_at3/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46070Os.55414.1.S1_at2/115+26637834..26638620hAT dimerisation domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0016459cellular_componentmyosin
GO:0016461cellular_componentunconventional myosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27335.1.S1_x_at--295--2311Chr05:26620187..26620211 (25 bp)
AAAGGCCTCACTATCATCTGCTAGT
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--674--451Chr05:26620202..26620226 (25 bp)
ATCTGCTAGTCACTTGGGCCAACAA
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--852--2531Chr05:26620231..26620255 (25 bp)
AACTCACACACTGGTTGGGCATAGT
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--1043--2271Chr05:26620258..26620282 (25 bp)
AAATCCTCAACAACTGCTTGCATCT
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--415--111Chr05:26620399..26620423 (25 bp)
ATTCTGATCCACAAGTTGCTTACCC
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--546--7431Chr05:26620695..26620719 (25 bp)
GTGTTTACACAGTTTGCAGATTCAG
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--1136--251Chr05:26620907..26620928 (22 bp)
ATATGCGATGATGTTTGCCCAGCTC
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--981--3291Chr05:26621233..26621257 (25 bp)
CAAATAATGCCACCAGCTTTTCTGT
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--568--5771Chr05:26621268..26621376 (25 bp)
GACGATTCCAGCATACCTTTTTCAC
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--664--71Chr05:26621385..26621409 (25 bp)
ATTGCGAAGTCGATGCCAACCATTG
LOC_Os05g46030
OsAffx.27335.1.S1_x_at--732--5831Chr05:26621427..26621451 (25 bp)
GACCTGCTACCTTTTGTCCGTGAAA
LOC_Os05g46030
Target Sequence 
AAAGGCCTCACTATCATCTGCTAGTCACTTGGGCCAACAAAGCCAACTCACACACTGGTTGGGCATAGTGAAAATCCTCA
ACAACTGCTTGCATCTGCTAAGAGCAAATCATGTCCCATCAATTCTGATCCACAAGTTGCTTACCCAAATATTTTCTATG
CTTAAGTTTTTAGTGTTTACACAGTTTGCAGATTCAGCCTGGGAAGCACTGAGGCATATAAGACAAGCTGTTGATTTCTT
GGTAATTTCGCTGAAGCCAATACGGACATGGAGTGAAATATGCGATGATGTTTGCCCAGCTCTCAGCTTACAGCAGCTTG
AGCGTATAGTTGGCATGTACTGGGATGATATGAATGGCACAAACATTATTTCAGCAGAGTTCACATCAAGCATGAGAACT
ATGATGAAGGAGGAATCAAATAATGCCACCAGCTTTTCTGTCCTGTTGGATGACGATTCCAGCATACCTTTTTCACTTGA
AGACATTGCGAAGTCGATGCCAACCATTGAGGAGACGACAGAGAATGACCTGCTACCTTTTGTCCGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27335.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis