Browse Element(s) Details


OsAffx.27348.1.A1_at

Description tigr:9633.m04414
TID=OsAffx.27348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g202701/11Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20280Os.12757.1.S1_a_at11/114+11310700..11314090protein tyrosine phosphatase, putative, expressed
LOC_Os04g20280Os.12757.4.S1_x_at1/114+11310700..11314090protein tyrosine phosphatase, putative, expressed
LOC_Os04g20290NANA4+11322177..11324620hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005677cellular_componentchromatin silencing complex
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27348.1.A1_at--392--1211Chr05:27078090..27078114 (25 bp)
AGTTTCTATCCATCCCTCTGTTTTT
NONE
OsAffx.27348.1.A1_at--79--10151Chr05:27078084..27078108 (25 bp)
TATCCATCCCTCTGTTTTTCCGTTT
NONE
OsAffx.27348.1.A1_at--22--7151Chr05:27078053..27078077 (25 bp)
GTCTTCTTCCCTTCAGCTCGATAGC
NONE
OsAffx.27348.1.A1_at--470--5431Chr05:27077961..27077985 (25 bp)
GAACCCGCCTGTTCTCACCTTTGTC
NONE
OsAffx.27348.1.A1_at--624--4191Chr05:27077908..27077932 (25 bp)
CCTGGAAGCTAAACCTCGTCGGCAT
NONE
OsAffx.27348.1.A1_at--978--8511Chr05:27077906..27077930 (25 bp)
TGGAAGCTAAACCTCGTCGGCATGC
NONE
OsAffx.27348.1.A1_at--1026--2691Chr05:27077903..27077927 (25 bp)
AAGCTAAACCTCGTCGGCATGCCTG
NONE
OsAffx.27348.1.A1_at--254--2371Chr05:27077898..27077922 (25 bp)
AAACCTCGTCGGCATGCCTGCTGGT
NONE
OsAffx.27348.1.A1_at--489--7192Chr05:27077891..27077915 (25 bp)
GTCGGCATGCCTGCTGGTATGATGA
NONE
OsAffx.27348.1.A1_at--674--8271Chr05:27077888..27077912 (25 bp)
GGCATGCCTGCTGGTATGATGATGT
NONE
OsAffx.27348.1.A1_at--843--6531Chr05:27077844..27077868 (25 bp)
GTTGTCAGCGTCCGCCTGTCCCTGG
NONE
Target Sequence 
AGTTTCTATCCATCCCTCTGTTTTTCCGTTTTCTCCCGTCTTCTTCCCTTCAGCTCGATAGCCTCGAGCTTTTTCACGGC
GATGAGCCCCTCGCCGCGCCATTGGAAGCTCCCCTTTGTACACTGTGCCGAACCCGCCTGTTCTCACCTTTGTCGCGAAA
TTGGAGGTCATCGTTGTAATCTCCTGGAAGCTAAACCTCGTCGGCATGCCTGCTGGTATGATGATGTCGTCGTCATCTCC
GCCGTCGTTGTCAGCGTCCGCCTGTCCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27348.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis