Browse Element(s) Details


OsAffx.27393.1.S1_at

Description tigr:9633.m04735
TID=OsAffx.27393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5032011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27393.1.S1_at--1000--3611Chr05:28754321..28754345 (25 bp)
CTTGTGATGTCTCTTTACCTCTGGA
LOC_Os05g50320
OsAffx.27393.1.S1_at--1109--8671Chr05:28754319..28754343 (25 bp)
TGTGATGTCTCTTTACCTCTGGAAG
LOC_Os05g50320
OsAffx.27393.1.S1_at--582--8871Chr05:28754317..28754341 (25 bp)
TGATGTCTCTTTACCTCTGGAAGGT
LOC_Os05g50320
OsAffx.27393.1.S1_at--849--751Chr05:28754315..28754339 (25 bp)
ATGTCTCTTTACCTCTGGAAGGTAA
LOC_Os05g50320
OsAffx.27393.1.S1_at--593--5311Chr05:28754284..28754308 (25 bp)
GAAGGATAGGTCATGTGGCCACCCA
LOC_Os05g50320
OsAffx.27393.1.S1_at--848--171Chr05:28754260..28754284 (25 bp)
ATTTCTACCCTCCAGATTTCAAACT
LOC_Os05g50320
OsAffx.27393.1.S1_at--550--1251Chr05:28754247..28754271 (25 bp)
AGATTTCAAACTCCAGCTCTCTATT
LOC_Os05g50320
OsAffx.27393.1.S1_at--942--6511Chr05:28754246..28754270 (25 bp)
GATTTCAAACTCCAGCTCTCTATTA
LOC_Os05g50320
OsAffx.27393.1.S1_at--957--4351Chr05:28754236..28754259 (24 bp)
CCAGCTCTCTATTAATGGGTTCAGA
LOC_Os05g50320
OsAffx.27393.1.S1_at--652--9771Chr05:28754174..28754247 (25 bp)
TAATGGGTTCAGAGCAAAGTACAAC
LOC_Os05g50320
OsAffx.27393.1.S1_at--820--7671Chr05:28754170..28754243 (25 bp)
GGGTTCAGAGCAAAGTACAACTCAA
LOC_Os05g50320
Target Sequence
CTTGTGATGTCTCTTTACCTCTGGAAGGTAAAGGAGAGAAGGATAGGTCATGTGGCCACCCATTTCTACCCTCCAGATTT
CAAACTCCAGCTCTCTATTAATGGGTTCAGAGCAAAGTACAACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis