Browse Element(s) Details


OsAffx.27508.85.S1_s_at

Description gb:AK107288.1
DB_XREF= gi:32992497
TID=OsAffx.27508.85
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B08, full insert sequence.
FL= gb:AK107288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2545010/11AIG1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0004888molecular_functiontransmembrane receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.85.S1_s_at--945--6591Chr01:14413347..14413371 (25 bp)
GATTGAGGACTACATTTCTGTTGGA
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--854--10471Chr01:14413436..14413460 (25 bp)
TTAACATGGAGTCACGCCTGAAAAT
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--646--2991Chr01:14413485..14413509 (25 bp)
AATGTTGTTCTTCGGTTTATCTCTG
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--13--4971Chr01:14413518..14413542 (25 bp)
GCATAGTGCAATTGCTTTGGGCATT
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--284--10831Chr01:14413534..14413558 (25 bp)
TTGGGCATTAACTTGCAGTCACAAT
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--620--7091Chr01:14413551..14413575 (25 bp)
GTCACAATACTTACTCAGAAGGCAT
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--880--1311Chr01:14413580..14413604 (25 bp)
AGATGGCACTTCACATTGGCCTAAA
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--682--1311Chr01:14413649..14413673 (25 bp)
AGATGGTTCAGATAGCACTCTTGGG
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--347--10871Chr01:14413684..14413708 (25 bp)
TTGGCAACCTCCATGTATAAGAGCT
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--679--351Chr01:14413700..14413724 (25 bp)
ATAAGAGCTTTGTCCATTCCGCGGA
LOC_Os01g25450
OsAffx.27508.85.S1_s_at--745--10651Chr01:14413716..14413740 (25 bp)
TTCCGCGGAGCATAATTAGCTTATT
NONE
Target Sequence 
GATTGAGGACTACATTTCTGTTGGAGAAAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTG
CATATGGCGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCT
CTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGC
ACTTCACATTGGCCTAAACACTCTGCGTAATGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCAC
TCTTGGGGCTTGTTCCATTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.85.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis