Browse Element(s) Details


OsAffx.27536.1.S1_x_at

Description tigr:9634.m00917
TID=OsAffx.27536.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0960011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09550OsAffx.27538.1.S1_at11/116+4861981..4862639hypothetical protein
LOC_Os06g09560Os.5817.1.S1_at11/116+4866844..4869145DnaJ domain containing protein, expressed
LOC_Os06g09570Os.14676.2.S1_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570Os.14676.1.S1_a_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580Os.35344.3.S1_x_at9/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_at7/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580Os.35344.18.S1_x_at6/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_x_at5/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09600OsAffx.27536.1.S1_x_at11/116+4884948..4885654expressed protein
LOC_Os06g09610Os.22674.1.S1_at10/116+4887550..4889730AhpC/TSA family protein, expressed
LOC_Os06g09620OsAffx.27533.1.S1_at11/116+4891310..4894722expressed protein
LOC_Os06g09630Os.7644.1.S1_at11/116+4896181..48995653-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os06g09640NANA6+4901972..4904936retrotransposon protein, putative, unclassified
LOC_Os06g09650NANA6+4905808..4911549retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27536.1.S1_x_at--574--4211Chr06:4885458..4885482 (25 bp)
CCGCCATGGGTGGTGCTTCTTCTCG
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--40--4432Chr11:1795819..1795843 (23 bp)
GCCATGGGTGGTGCTTCTTCTCGCG
NONE
OsAffx.27536.1.S1_x_at--750--4331Chr06:4885455..4885479 (25 bp)
CCATGGGTGGTGCTTCTTCTCGCGA
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--413--3511Chr06:4885454..4885478 (25 bp)
CATGGGTGGTGCTTCTTCTCGCGAG
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--734--8611Chr06:4885448..4885472 (25 bp)
TGGTGCTTCTTCTCGCGAGGATGGT
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--1116--7771Chr06:4885447..4885471 (25 bp)
GGTGCTTCTTCTCGCGAGGATGGTT
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--912--6771Chr06:4885425..4885449 (25 bp)
GTTTGGAACCGGAGTCGTCTCCTGC
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--844--1391Chr06:4885206..4885230 (25 bp)
AGACGACGCCGTTCGAGTGGGAAAT
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--162--5611Chr06:4885186..4885210 (25 bp)
GAAATTGTTAGGTCTCTGCCTCTCA
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--828--4651Chr06:4885104..4885128 (25 bp)
GCGTCGTTCGGCTGTGGAATCACGT
LOC_Os06g09600
OsAffx.27536.1.S1_x_at--382--9991Chr06:4885035..4885059 (25 bp)
TAGCCGGCGGCGTTGTCTCGGCCTT
LOC_Os06g09600
Target Sequence 
CCGCCATGGGTGGTGCTTCTTCTCGCGAGGATGGTTTGGAACCGGAGTCGTCTCCTGCGACGGCGGCGTCCGAGCAGGCG
AGGTCGTCGTCGGAGAGGCAGCCCGAGCCGGCCTCGTCGCCGTCGCCGAAGGAGACGTACACGGCGTACTTCCACGACAG
CTGCTGCGTCGGGTGCTGCGACATGGACGACGACGACGACGACGGCGAGGAGGTGCTCGAAGAGGAGGAGGACGACGACG
ACGAGCCGTCGGAGACGACGCCGTTCGAGTGGGAAATTGTTAGGTCTCTGCCTCTCAGCCCGACGGCGGCGGCGGAGGTT
CGCCGGTACAGGGACTCGGCGCCGCTCGGCGGAAGCGTCGTTCGGCTGTGGAATCACGTCGCCGGCGGGGGCGTAACGGC
GGCGAGCCCGAGGCGGAGGGGACTAGCCGGCGGCGTTGTCTCGGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27536.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis