Browse Element(s) Details


OsAffx.27571.1.S1_at

Description tigr:9634.m01145
TID=OsAffx.27571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1171011/11Cytokinin-O-glucosyltransferase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27571.1.S1_at--676--10531Chr06:6201222..6201246 (25 bp)
TTCATAAACCCCATGTTCCACTTCG
LOC_Os06g11710
OsAffx.27571.1.S1_at--276--3911Chr06:6201262..6201286 (25 bp)
CGGCCGGCTTCGTGGTCACCTTCGT
LOC_Os06g11710
OsAffx.27571.1.S1_at--301--2651Chr06:6201300..6201324 (25 bp)
AACCACGCGCTCATGCTGTCGCGGG
LOC_Os06g11710
OsAffx.27571.1.S1_at--325--5751Chr06:6201342..6201366 (25 bp)
GACGGCATCCGGTACGAGGCGATCC
LOC_Os06g11710
OsAffx.27571.1.S1_at--196--4031Chr06:6201524..6201548 (25 bp)
CGTCACGTGCGTGGTGGCGTCCGAG
LOC_Os06g11710
OsAffx.27571.1.S1_at--562--8371Chr06:6201585..6201609 (25 bp)
GGCGTCGCCGCCTACATGCTGTGGG
LOC_Os06g11710
OsAffx.27571.1.S1_at--199--5911Chr06:6201639..6201663 (25 bp)
GAGCTCAGGCGCAGAGGCTACGTAC
LOC_Os06g11710
OsAffx.27571.1.S1_at--592--891Chr06:6201645..6201669 (25 bp)
AGGCGCAGAGGCTACGTACCACTCA
LOC_Os06g11710
OsAffx.27571.1.S1_at--257--1311Chr06:6201651..6201672 (22 bp)
AGAGGCTACGTACCACTCAAAGAAA
LOC_Os06g11710
OsAffx.27571.1.S1_at--635--9931Chr06:6201657..6201744 (25 bp)
TACGTACCACTCAAAGAAACACAAG
LOC_Os06g11710
OsAffx.27571.1.S1_at--816--2451Chr06:6201737..6201761 (25 bp)
AACACAAGTAAACGCAGGTGCTCAC
LOC_Os06g11710
Target Sequence 
TTCATAAACCCCATGTTCCACTTCGCGCGGCTGCTGCGCTCGGCCGGCTTCGTGGTCACCTTCGTGAACACCGAGCGCAA
CCACGCGCTCATGCTGTCGCGGGGGCGCAAGCGCGACGGCGACGGCATCCGGTACGAGGCGATCCCGGACGGCCTCTCGC
CGCCGGAGCGCGGCGCGCAGGACGACTACGGCTTCGGCCTCCTGCACGCCGTGCGCGCCAACGGCCCGGGGCACCTCAGG
GAGCTCATCGCGCGCCTCAACACCGGCCGCGGTGGCGGCGCCGGTGACTCGCCGCCGCCGCCCGTCACGTGCGTGGTGGC
GTCCGAGCTGATGAGCTTCGCGCTCGACGTGGCCGCCGAGCTGGGCGTCGCCGCCTACATGCTGTGGGGCACCAGCGCGT
GCGGCCTCGCCGTGCGCGAGCTCAGGCGCAGAGGCTACGTACCACTCAAAGAAACACAAGTAAACGCAGGTGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis