Browse Element(s) Details


OsAffx.27731.1.S1_at

Description tigr:9634.m01973
TID=OsAffx.27731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2030011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20280OsAffx.15513.1.S1_at11/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.15513.1.S1_x_at10/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_x_at3/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_at1/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20290OsAffx.27730.1.S1_at11/116+11652823..11653706hypothetical protein
LOC_Os06g20300OsAffx.27731.1.S1_at11/116+11656555..11657562hypothetical protein
LOC_Os06g20310Os.49898.2.S1_at11/116+11668580..11672431expressed protein
LOC_Os06g20310Os.49898.1.S1_at10/116+11668580..11672431expressed protein
LOC_Os06g20320Os.5054.1.S1_at11/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20320Os.27772.1.S1_x_at1/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20330OsAffx.15514.1.S1_at11/116+11681267..11682206expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27731.1.S1_at--582--8352Chr06:11656608..11656632 (25 bp)
GGCGGCGCACCAAGATCTCATATGC
LOC_Os06g20300
OsAffx.27731.1.S1_at--386--2812Chr06:11656619..11656643 (25 bp)
AAGATCTCATATGCAGGCTGCTGGA
LOC_Os06g20300
OsAffx.27731.1.S1_at--725--4472Chr06:11656759..11656782 (24 bp)
GCCTGGATGATTACCGCCATCAGGT
LOC_Os06g20300
OsAffx.27731.1.S1_at--690--4432Chr06:11656774..11657137 (25 bp)
GCCATCAGGTGGACATTCAATATCA
LOC_Os06g20300
OsAffx.27731.1.S1_at--209--3112Chr06:11657131..11657155 (25 bp)
AATATCATCGGCTTGGCACTGCTGA
LOC_Os06g20300
OsAffx.27731.1.S1_at--908--72Chr06:11657164..11657188 (25 bp)
ATTGCGGTTCAATTTCCATGGAGCG
LOC_Os06g20300
OsAffx.27731.1.S1_at--70--3132Chr06:11657174..11657198 (25 bp)
AATTTCCATGGAGCGGTACTGTACT
LOC_Os06g20300
OsAffx.27731.1.S1_at--923--6992Chr06:11657189..11657213 (25 bp)
GTACTGTACTAGACCTGACCATTTT
LOC_Os06g20300
OsAffx.27731.1.S1_at--102--1392Chr06:11657199..11657223 (25 bp)
AGACCTGACCATTTTTGTAGCCGAC
LOC_Os06g20300
OsAffx.27731.1.S1_at--762--172Chr06:11657209..11657233 (25 bp)
ATTTTTGTAGCCGACGTGCTCATCT
LOC_Os06g20300
OsAffx.27731.1.S1_at--1014--7312Chr06:11657224..11657248 (25 bp)
GTGCTCATCTGTCTAGCCATTCCAG
LOC_Os06g20300
Target Sequence 
GGCGGCGCACCAAGATCTCATATGCAGGCTGCTGGAAGAAGGGCGTGCCCCGCCGCGGCGCGCGGCGGAGGAAGTCGACC
GCCGCGTTTTGGCCCGGAGCTCCGGCCGGATCAACGGCATCTCCGACGACGCGCCCACCATCCGTGTCGCCGCCTGGATG
ATTACCGCCATCAGGTGGACATTCAATATCATCGGCTTGGCACTGCTGATCTTCTACATTGCGGTTCAATTTCCATGGAG
CGGTACTGTACTAGACCTGACCATTTTTGTAGCCGACGTGCTCATCTGTCTAGCCATTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis