Browse Element(s) Details


OsAffx.27770.1.S1_x_at

Description tigr:9634.m02203
TID=OsAffx.27770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g224708/11hypothetical protein
LOC_Os01g629604/11hypothetical protein
LOC_Os06g232301/11transposon protein, putative, Mutator sub-class
LOC_Os04g062901/11Zinc knuckle family protein
LOC_Os07g203601/11Zinc knuckle family protein
LOC_Os09g040401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22430Os.46306.1.S1_x_at6/116+13033642..13039977transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g22440Os.52682.1.S1_at11/116+13040901..13043159SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g22450OsAffx.15555.1.S1_at11/116+13051783..13052172hypothetical protein
LOC_Os06g22460OsAffx.27769.1.S1_at11/116+13054163..13057028NB-ARC domain containing protein, expressed
LOC_Os06g22470OsAffx.27770.1.S1_x_at8/116+13060316..13061207hypothetical protein
LOC_Os06g22470Os.51841.1.S1_x_at1/116+13060316..13061207hypothetical protein
LOC_Os06g22480OsAffx.29300.1.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_x_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22490OsAffx.4902.1.S1_at11/116+13069022..13069936Sterol desaturase family protein
LOC_Os06g22500OsAffx.27771.2.S1_s_at11/116+13073538..13074388hypothetical protein
LOC_Os06g22500OsAffx.27771.1.S1_x_at7/116+13073538..13074388hypothetical protein
LOC_Os06g22510NANA6+13078439..13081872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22520OsAffx.22699.1.S1_x_at2/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22520OsAffx.8279.1.S1_at1/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22520OsAffx.31867.1.S1_x_at1/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22520Os.52731.1.S1_at1/116+13082345..13089236retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27770.1.S1_x_at--857--2393Chr06:7980127..7980147 (21 bp)
AAAAAGAGGTCTAGTGCAGTCGGGA
NONE
OsAffx.27770.1.S1_x_at--290--1151Chr06:13060761..13061160 (25 bp)
AGTCGGGATACCATGCTTGATCCAT
LOC_Os06g22470
OsAffx.27770.1.S1_x_at--519--7193Chr09:6896626..6897049 (25 bp)
GTCGGGATACCATGCTTGATCCATG
NONE
OsAffx.27770.1.S1_x_at--552--9431Chr01:36805021..36805470 (25 bp)
TCGGGATACCATGCTTGATCCATGC
LOC_Os01g62960
OsAffx.27770.1.S1_x_at--260--3972Chr09:6896628..6897051 (25 bp)
CGGGATACCATGCTTGATCCATGCA
NONE
OsAffx.27770.1.S1_x_at--330--7672Chr09:6896629..6897052 (25 bp)
GGGATACCATGCTTGATCCATGCAG
NONE
OsAffx.27770.1.S1_x_at--445--1512Chr06:13060699..13060723 (25 bp)
AGCAGCGAGGGCAGGAGTCTGACTT
LOC_Os06g22470
OsAffx.27770.1.S1_x_at--456--2911Chr06:13060387..13060673 (25 bp)
AAGGAAATTGAGGTGACAGGGAGGC
LOC_Os06g22470
OsAffx.27770.1.S1_x_at--11--7651Chr06:13060369..13060393 (25 bp)
GGGAGGCGATCTAACCGGCGGTGTG
LOC_Os06g22470
OsAffx.27770.1.S1_x_at--773--451Chr06:13060361..13060385 (25 bp)
ATCTAACCGGCGGTGTGCGAGCGGT
LOC_Os06g22470
OsAffx.27770.1.S1_x_at--856--8357Chr04:3281878..3281982 (25 bp)
GGCGGTGTGCGAGCGGTCCGACCGG
NONE
Target Sequence 
AAAAAGAGGTCTAGTGCAGTCGGGATACCATGCTTGATCCATGCAGAGGCAAGCCGACTCGGCTCAGGCGGCAAGCAGCA
GCAGCGAGGGCAGGAGTCTGACTTGGGTGCGGCTGCGGATTCGGAGAAAAAGGAAATTGAGGTGACAGGGAGGCGATCTA
ACCGGCGGTGTGCGAGCGGTCCGACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27770.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis