Browse Element(s) Details


OsAffx.27788.1.S1_at

Description tigr:9634.m02312
TID=OsAffx.27788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2346011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein
LOC_Os06g23420Os.54057.1.S1_at11/116+13673055..13675419Exostosin family protein, expressed
LOC_Os06g23430Os.1315.1.S1_at11/116+13676509..13680874Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440Os.4711.1.S1_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440Os.57496.1.S1_x_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450OsAffx.4916.1.S1_at10/116+13686769..13687747retrotransposon protein, putative, unclassified
LOC_Os06g23460OsAffx.27788.1.S1_at11/116+13689562..13696927KH domain containing protein, expressed
LOC_Os06g23470NANA6+13698713..13699326hypothetical protein
LOC_Os06g23480NANA6+13700073..13700447hypothetical protein
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0010093biological_processspecification of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27788.1.S1_at--902--9791Chr06:13690113..13690224 (25 bp)
TAAGCGAGATGTCTGGTGCCACTGT
LOC_Os06g23460
OsAffx.27788.1.S1_at--882--2051Chr06:13690085..13690109 (25 bp)
ACTTGCTGACGAAAGGCCTGACGCC
LOC_Os06g23460
OsAffx.27788.1.S1_at--300--3111Chr06:13690043..13690067 (25 bp)
AATATCTGGTACTCCTGAGCAGGCT
LOC_Os06g23460
OsAffx.27788.1.S1_at--817--4471Chr06:13690005..13690029 (25 bp)
GCCTGCTTCAGGGATTTATTCTTAG
LOC_Os06g23460
OsAffx.27788.1.S1_at--793--4371Chr06:13689893..13689917 (25 bp)
CCAAGATGACATTCCTTCAGGCTAA
LOC_Os06g23460
OsAffx.27788.1.S1_at--28--6231Chr06:13689856..13689880 (25 bp)
GAGGCCTACGCTGTCATGTTCAGTA
LOC_Os06g23460
OsAffx.27788.1.S1_at--591--7851Chr06:13689803..13689827 (25 bp)
GGTATTTTAACCTCTGCTAGCATGA
LOC_Os06g23460
OsAffx.27788.1.S1_at--119--6151Chr06:13689780..13689804 (25 bp)
GAGGTGTGCCTGACTTAGCATTATT
LOC_Os06g23460
OsAffx.27788.1.S1_at--937--6731Chr06:13689743..13689767 (25 bp)
GTTCATGTATACCACCAAGTTGCCA
LOC_Os06g23460
OsAffx.27788.1.S1_at--1--6691Chr06:13689725..13689749 (25 bp)
GTTGCCAACATGTACTGTCCAAAGT
LOC_Os06g23460
OsAffx.27788.1.S1_at--361--10251Chr06:13689631..13689655 (25 bp)
TTTGAGAAACAATCACCCTACCGCT
LOC_Os06g23460
Target Sequence 
TAAGCGAGATGTCTGGTGCCACTGTCACACTTGCTGACGAAAGGCCTGACGCCATAGAAAAAGTTGTTCGAATATCTGGT
ACTCCTGAGCAGGCTGACAAAGCTCAGAGCCTGCTTCAGGGATTTATTCTTAGCATCCAAGATGACATTCCTTCAGGCTA
ATTGGAGACAGTGGAGGCCTACGCTGTCATGTTCAGTAGGGTGTAATGCATCTTGAGTTTTTGTGAGGTATTTTAACCTC
TGCTAGCATGAGGTGTGCCTGACTTAGCATTATTCGTGGGCAAAATGTTCATGTATACCACCAAGTTGCCAACATGTACT
GTCCAAAGTCCTAAAACATATTATGCGGTTTCTCGCAATCACCCCCACCGCTTTTTTTTCCTTTTTCTTTTTCCTTTTTT
TGAGAAACAATCACCCTACCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis