Browse Element(s) Details


OsAffx.27794.1.S1_at

Description tigr:9634.m02345
TID=OsAffx.27794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2377011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23710OsAffx.15583.1.S1_at8/116+13853886..13859640hypothetical protein
LOC_Os06g23710OsAffx.27828.1.S1_at3/116+13853886..13859640hypothetical protein
LOC_Os06g23720NANA6+13862323..13864047hypothetical protein
LOC_Os06g23730OsAffx.8326.1.S1_x_at1/116+13864855..13868093Transposable element protein, putative, Retrotrans_gag
LOC_Os06g23740OsAffx.27792.1.S1_at11/116+13870664..13872424hypothetical protein
LOC_Os06g23750OsAffx.27793.1.S1_at11/116+13876623..13877189hypothetical protein
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27794.1.S1_at--873--6211Chr06:13884950..13884974 (25 bp)
GAGGCGAATCGAGAACTGCGCCACA
LOC_Os06g23770
OsAffx.27794.1.S1_at--751--5971Chr06:13884940..13884964 (25 bp)
GAGAACTGCGCCACACGCCGATGTG
LOC_Os06g23770
OsAffx.27794.1.S1_at--881--2551Chr06:13884937..13884961 (25 bp)
AACTGCGCCACACGCCGATGTGGGA
LOC_Os06g23770
OsAffx.27794.1.S1_at--488--1911Chr06:13884890..13884914 (25 bp)
ACGTGTGGTGGCGAGCAGTTGCAGC
LOC_Os06g23770
OsAffx.27794.1.S1_at--327--6671Chr06:13884873..13884897 (25 bp)
GTTGCAGCTGCAGGGCGGACACGAA
LOC_Os06g23770
OsAffx.27794.1.S1_at--901--4691Chr06:13884793..13884817 (25 bp)
GCGGCATCATGCATCTCGTCCTCAA
LOC_Os06g23770
OsAffx.27794.1.S1_at--743--7631Chr06:13884715..13884739 (25 bp)
GGGACCCGTTGCACGACCTCAACGT
LOC_Os06g23770
OsAffx.27794.1.S1_at--627--851Chr06:13884686..13884710 (25 bp)
ATGGCTGCCCTGGAAAGCTCCGCCT
LOC_Os06g23770
OsAffx.27794.1.S1_at--473--3891Chr06:13884492..13884516 (25 bp)
CTGTGCATGCCTTGCGCGTGGTTGC
LOC_Os06g23770
OsAffx.27794.1.S1_at--601--591Chr06:13884486..13884510 (25 bp)
ATGCCTTGCGCGTGGTTGCGCCCGC
LOC_Os06g23770
OsAffx.27794.1.S1_at--892--3431Chr06:13884446..13884470 (25 bp)
CAGATAGAGGAATTGGGTATGACAT
LOC_Os06g23770
Target Sequence 
GAGGCGAATCGAGAACTGCGCCACACGCCGATGTGGGAAGAGGGTGACGGCGATGGGGCGACGTGTGGTGGCGAGCAGTT
GCAGCTGCAGGGCGGACACGAAGGGGTGACGAGGGAGGAGGATGTCGCCGCTGCCCCTTCCATCCTCCCCGAGACCGGCG
GCATCATGCATCTCGTCCTCAACCTCCGTCGCTTCGGCCTCGGCGTGGCGGAGCTCGAGCGCCTCAACTGCGGCGGGGAC
CCGTTGCACGACCTCAACGTCGCCATGGCTGCCCTGGAAAGCTCCGCCTCAGCCGCCGCCGCCGTCCGAGCAAGCTCTGT
CTCCGCCACCGACTGCTCGCTCCACCACTGGCCGCCTGCCGCCCGGGAGAGCTCCGTCTCCGCCGCGGACTGCCCGCTCC
CACTGGCCGCCCACCGCCCGGGCAAGCTCCGCCACCGGCCGGTCCACCTCCGCCTCCGCTGTGCATGCCTTGCGCGTGGT
TGCGCCCGCGAGAGAGAGAGAGAACAGATAGAGGAATTGGGTATGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis