Browse Element(s) Details


OsAffx.27850.1.A1_at

Description tigr:9634.m02723
TID=OsAffx.27850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g040901/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04040Os.21109.1.S1_at5/112+1754861..1757771SMC family, C-terminal domain containing protein, expressed
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04060NANA2+1766071..1767766SMC family, C-terminal domain containing protein
LOC_Os02g04070NANA2+1768220..1772620retrotransposon protein, putative, unclassified
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04090OsAffx.15996.1.S1_x_at4/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04090OsAffx.27850.1.A1_at1/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04100Os.12193.1.S1_at11/112+1784573..1788080Proteasome subunit alpha type 1, putative, expressed
LOC_Os02g04110Os.54956.1.S1_at11/112+1788746..1792353expressed protein
LOC_Os02g04110OsAffx.24091.1.S1_at10/112+1788746..1792353expressed protein
LOC_Os02g04120NANA2+1793713..1796926Cytidylyltransferase family protein, expressed
LOC_Os02g04130Os.27915.1.S1_at11/112+1799750..1800811expressed protein
LOC_Os02g04130OsAffx.25637.1.S1_at1/112+1799750..1800811expressed protein
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27850.1.A1_at--266--10231Chr06:16203204..16203228 (25 bp)
TATTGACGATTAGGGCCATCTCCTC
NONE
OsAffx.27850.1.A1_at--166--8831Chr06:16203142..16203166 (25 bp)
TGATTGGCCTTCAAACCTATCTCTT
NONE
OsAffx.27850.1.A1_at--230--5851Chr06:16203092..16203116 (25 bp)
GACCATTTGCTTCAATTCACGAGCT
NONE
OsAffx.27850.1.A1_at--905--9511Chr06:16203054..16203078 (25 bp)
TCTCATTTGACACGATCCGTCCAAG
NONE
OsAffx.27850.1.A1_at--103--10871Chr06:16203021..16203045 (25 bp)
TTGGAGAAAGCCTCTTGTAGTCCTT
NONE
OsAffx.27850.1.A1_at--181--1151Chr06:16203003..16203027 (25 bp)
AGTCCTTTCTCTCACGGATCATTGA
NONE
OsAffx.27850.1.A1_at--200--731Chr06:16202927..16202951 (25 bp)
ATGATTTGTCATATCTTCACTCCCA
NONE
OsAffx.27850.1.A1_at--498--2852Chr06:16202903..16202927 (25 bp)
AAGTCCTCTAATCTTGTTGACAAGG
NONE
OsAffx.27850.1.A1_at--14--10811Chr06:16202842..16202866 (25 bp)
TTGTCATCCATGACGAACCGTCCAA
NONE
OsAffx.27850.1.A1_at--232--2471Chr06:16202806..16202830 (25 bp)
AACAACTCAATCTTGGACTCACGCA
NONE
OsAffx.27850.1.A1_at--400--2251Chr06:16202742..16202766 (25 bp)
AAATTTCCATGGCTTCCTCAAGTCC
NONE
Target Sequence 
TATTGACGATTAGGGCCATCTCCTCATCTTCACTTTCTTCACCACCACTTGAATCTTCTTCTTGATTGGCCTTCAAACCT
ATCTCTTGGTTCTTGATCATGGCGGCATTCTTGACCATTTGCTTCAATTCACGAGCTTCTTCTTCAAGCATCTCATTTGA
CACGATCCGTCCAAGTATATCACTTGGAGAAAGCCTCTTGTAGTCCTTTCTCTCACGGATCATTGACACAAGTATGGGAT
TTCTTGGAACAAAGACACGAAGGAGTCTCTTAACAAAATGATTTGTCATATCTTCACTCCCAAGTCCTCTAATCTTGTTG
ACAAGGAGCATCATCCTATCATACATTTCTTGAGGGGTCTCCTTGTCATCCATGACGAACCGTCCAACTCTTCCCTCCAA
CAACTCAATCTTGGACTCACGCACGGCGGGTGAACCCTCATGAGCCAATTGCAAAGTATCCCAAATTTCCATGGCTTCCT
CAAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27850.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis