Browse Element(s) Details


OsAffx.27942.1.S1_at

Description tigr:9634.m03246
TID=OsAffx.27942.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3456010/11Zinc finger, C3HC4 type family protein
LOC_Os06g348801/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34490NANA6+20074934..20075926transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34500NANA6+20076971..20079548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34510NANA6+20080452..20083772transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520OsAffx.27929.1.S1_at11/116+20084774..20085595CAF1 family ribonuclease containing protein
LOC_Os06g34530NANA6+20087573..20088145Zinc finger, C3HC4 type family protein
LOC_Os06g34540NANA6+20092407..20093057hypothetical protein
LOC_Os06g34550OsAffx.27931.2.S1_at11/116+20093445..20093960hypothetical protein
LOC_Os06g34550OsAffx.27931.2.S1_x_at11/116+20093445..20093960hypothetical protein
LOC_Os06g34560OsAffx.27942.1.S1_at10/116+20097737..20099499Zinc finger, C3HC4 type family protein
LOC_Os06g34564OsAffx.20927.1.S1_x_at9/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.20927.1.S1_at8/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.17778.2.S1_at2/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.29316.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.14776.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.6537.1.S1_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570OsAffx.27937.1.S1_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.27937.2.S1_s_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.17323.1.S1_at1/116+20105011..20111110hypothetical protein
LOC_Os06g34580OsAffx.22699.1.S1_x_at1/116+20111705..20116213retrotransposon protein, putative, unclassified
LOC_Os06g34580OsAffx.8201.1.S1_x_at1/116+20111705..20116213retrotransposon protein, putative, unclassified
LOC_Os06g34590OsAffx.31829.1.S1_at11/116+20117370..20119153hypothetical protein
LOC_Os06g34600OsAffx.15923.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34600OsAffx.8794.1.S1_at1/116+20120528..20124292hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27942.1.S1_at--187--1511NONE
AGCAGCGGCACCCAAAATTCCAATG
NONE
OsAffx.27942.1.S1_at--1003--8152Chr06:20098914..20098933 (20 bp)
GGCACCCAAAATTCCAATGGACTCT
LOC_Os06g34560
OsAffx.27942.1.S1_at--35--852Chr06:20098925..20098949 (25 bp)
ATGGACTCTCAAATTCCAGTCTCGA
LOC_Os06g34560
OsAffx.27942.1.S1_at--180--2012Chr06:20098929..20098953 (25 bp)
ACTCTCAAATTCCAGTCTCGAGCTC
LOC_Os06g34560
OsAffx.27942.1.S1_at--757--9472Chr06:20098957..20098981 (25 bp)
TCTGAACACCATTTCTTGGCAGCGC
LOC_Os06g34560
OsAffx.27942.1.S1_at--44--10872Chr06:20098972..20098996 (25 bp)
TTGGCAGCGCGCACAGGCATGAACG
LOC_Os06g34560
OsAffx.27942.1.S1_at--822--5112Chr06:20098982..20099006 (25 bp)
GCACAGGCATGAACGGCTTTGCTCC
LOC_Os06g34560
OsAffx.27942.1.S1_at--300--8012Chr06:20099059..20099083 (25 bp)
GGATGGATCGCGTCGACGGCCATCT
LOC_Os06g34560
OsAffx.27942.1.S1_at--834--7972Chr06:20099063..20099087 (25 bp)
GGATCGCGTCGACGGCCATCTTCAT
LOC_Os06g34560
OsAffx.27942.1.S1_at--441--4332Chr06:20099117..20099141 (25 bp)
CCATGGCGGTCTCCGTCTACTGCTG
LOC_Os06g34560
OsAffx.27942.1.S1_at--663--9532Chr06:20099132..20099156 (25 bp)
TCTACTGCTGCCTCCTGTGCAGAGA
LOC_Os06g34560
Target Sequence 
AGCAGCGGCACCCAAAATTCCAATGGACTCTCAAATTCCAGTCTCGAGCTCCCCTCTGAACACCATTTCTTGGCAGCGCG
CACAGGCATGAACGGCTTTGCTCCGACCGGCTACCAGCAGCCGCCGCCGCCGCCTGCGGCCAGCGCTTCGCCGGGCGGAT
GGATCGCGTCGACGGCCATCTTCATGTCCATCTTCTTCTCCACCTTCCTCCTCGCCATGGCGGTCTCCGTCTACTGCTGC
CTCCTGTGCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis