Browse Element(s) Details


OsAffx.27978.1.S1_at

Description tigr:9634.m03584
TID=OsAffx.27978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37550OsAffx.15800.1.S1_at9/116+22235414..22238578hypothetical protein
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27978.1.S1_at--972--4311Chr06:22255975..22255999 (25 bp)
CCATCGTCACCCCATTGAAGGAGAT
LOC_Os06g37580
OsAffx.27978.1.S1_at--293--511Chr06:22255973..22255997 (25 bp)
ATCGTCACCCCATTGAAGGAGATCG
LOC_Os06g37580
OsAffx.27978.1.S1_at--550--7091Chr06:22255971..22255994 (24 bp)
GTCACCCCATTGAAGGAGATCGGGA
LOC_Os06g37580
OsAffx.27978.1.S1_at--633--8051Chr06:22255749..22255980 (25 bp)
GGAGATCGGGATTGCACTATCTACT
LOC_Os06g37580
OsAffx.27978.1.S1_at--421--6391Chr06:22255746..22255977 (25 bp)
GATCGGGATTGCACTATCTACTACA
LOC_Os06g37580
OsAffx.27978.1.S1_at--555--9431Chr06:22255744..22255764 (21 bp)
TCGGGATTGCACTATCTACTACAAA
LOC_Os06g37580
OsAffx.27978.1.S1_at--512--7671Chr06:22255742..22255764 (23 bp)
GGGATTGCACTATCTACTACAAAGA
LOC_Os06g37580
OsAffx.27978.1.S1_at--675--6591Chr06:22255740..22255764 (25 bp)
GATTGCACTATCTACTACAAAGAAA
LOC_Os06g37580
OsAffx.27978.1.S1_at--857--5511Chr06:22255719..22255743 (25 bp)
GAAAATTAACATGTCAATCAATGAA
LOC_Os06g37580
OsAffx.27978.1.S1_at--1116--7072Chr06:22255573..22255597 (25 bp)
GTCAATCAATGAATATATCACTAAG
NONE
OsAffx.27978.1.S1_at--10--251Chr06:22255693..22255717 (25 bp)
ATATCACTAAGATGAAGGCTTTAGG
LOC_Os06g37580
Target Sequence 
CCATCGTCACCCCATTGAAGGAGATCGGGATTGCACTATCTACTACAAAGAAAATTAACATGTCAATCAATGAATATATC
ACTAAGATGAAGGCTTTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis