Browse Element(s) Details


OsAffx.28006.1.S1_at

Description tigr:9634.m03767
TID=OsAffx.28006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3939011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39370Os.8945.1.S1_at11/116+23366379..23367832Kelch motif family protein, expressed
LOC_Os06g39380OsAffx.15840.1.S1_at10/116+23371312..23372382hypothetical protein
LOC_Os06g39390OsAffx.28006.1.S1_at11/116+23378161..23380411Transferase family protein, expressed
LOC_Os06g39400OsAffx.31727.1.S1_at6/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400OsAffx.27238.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400Os.51311.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39410Os.46578.1.S1_at3/116+23400153..23400370hypothetical protein
LOC_Os06g39410Os.46578.1.S1_x_at2/116+23400153..23400370hypothetical protein
LOC_Os06g39420OsAffx.10967.5.S1_x_at10/116+23404705..23406362hypothetical protein
LOC_Os06g39420OsAffx.10967.5.S1_at10/116+23404705..23406362hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28006.1.S1_at--930--9351Chr06:23378991..23379015 (25 bp)
TCGACATCGTCATCGCCAAGCTCTG
LOC_Os06g39390
OsAffx.28006.1.S1_at--974--2691Chr06:23378974..23378998 (25 bp)
AAGCTCTGGCAGTGCCGGACGCGCG
LOC_Os06g39390
OsAffx.28006.1.S1_at--1136--411Chr06:23378854..23378878 (25 bp)
ATCTTCCCGGTGAAGGTGTCCGCGG
LOC_Os06g39390
OsAffx.28006.1.S1_at--900--7991Chr06:23378763..23378787 (25 bp)
GGATGGCCGGCGAGTGCCTGCGCTG
LOC_Os06g39390
OsAffx.28006.1.S1_at--827--8911Chr06:23378700..23378724 (25 bp)
TGACGTTCGACTACGAGTCCGTGTA
LOC_Os06g39390
OsAffx.28006.1.S1_at--235--5711Chr06:23378692..23378716 (25 bp)
GACTACGAGTCCGTGTACGTGTCGG
LOC_Os06g39390
OsAffx.28006.1.S1_at--859--8751Chr06:23378679..23378703 (25 bp)
TGTACGTGTCGGACTGGAGCAAGCT
LOC_Os06g39390
OsAffx.28006.1.S1_at--1080--7211Chr06:23378641..23378665 (25 bp)
GTCGACTACGGGTACGGCGCGCCGT
LOC_Os06g39390
OsAffx.28006.1.S1_at--136--7571Chr06:23378608..23378632 (25 bp)
GGGCCGCTGGTGAACTGCGACCTCA
LOC_Os06g39390
OsAffx.28006.1.S1_at--657--8611Chr06:23378601..23378625 (25 bp)
TGGTGAACTGCGACCTCATCTCGTC
LOC_Os06g39390
OsAffx.28006.1.S1_at--776--1751Chr06:23378589..23378613 (25 bp)
ACCTCATCTCGTCGGTGATCGTCAT
LOC_Os06g39390
Target Sequence 
TCGACATCGTCATCGCCAAGCTCTGGCAGTGCCGGACGCGCGCCATCGCCGCCGACCCCGCCGCGGCCGTCAAGCTCTGC
TTCTTCGCCAGCGCCCGCCAGGTGCTCGGCCTGGAGACCGGCTACTGGGGCAACGCCATCTTCCCGGTGAAGGTGTCCGC
GGCGGCGGGGGAGGTGGCGGCGTCGTCGGTGATCGAGCTCGTCGGCGTGGTCCGGGAGGCGAAGCGGCGGATGGCCGGCG
AGTGCCTGCGCTGGGCGGAGGGGCGCACCGGCGGCGCCGACCCGTTCCAGATGACGTTCGACTACGAGTCCGTGTACGTG
TCGGACTGGAGCAAGCTCGGGTTCAACGACGTCGACTACGGGTACGGCGCGCCGTCGGCGGCGGGGCCGCTGGTGAACTG
CGACCTCATCTCGTCGGTGATCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis