Browse Element(s) Details


OsAffx.28024.1.S1_at

Description tigr:9634.m03879
TID=OsAffx.28024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4043011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40400NANA6+24055973..24056977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40420OsAffx.28023.2.S1_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.2.S1_s_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.1.S1_at2/116+24075180..24076128hypothetical protein
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28024.1.S1_at--661--10131Chr06:24081871..24081895 (25 bp)
TATCCCCTCTCCAGGCGCGACGGAG
LOC_Os06g40430
OsAffx.28024.1.S1_at--66--3951Chr06:24081991..24082015 (25 bp)
CGGAGTTGGCCCTGGCTACGACAGA
LOC_Os06g40430
OsAffx.28024.1.S1_at--703--10871Chr06:24081996..24082020 (25 bp)
TTGGCCCTGGCTACGACAGACGGCA
LOC_Os06g40430
OsAffx.28024.1.S1_at--48--4551Chr06:24081999..24082023 (25 bp)
GCCCTGGCTACGACAGACGGCAGGA
LOC_Os06g40430
OsAffx.28024.1.S1_at--310--3911Chr06:24082002..24082026 (25 bp)
CTGGCTACGACAGACGGCAGGACAG
LOC_Os06g40430
OsAffx.28024.1.S1_at--848--8131Chr06:24082021..24082045 (25 bp)
GGACAGGAGCTGCACAACCCAGGCC
LOC_Os06g40430
OsAffx.28024.1.S1_at--922--5712Chr06:24082057..24082081 (25 bp)
GACTCCTTCTTGATGTCGCCGGCGC
LOC_Os06g40430
OsAffx.28024.1.S1_at--974--8351Chr06:24082143..24082167 (25 bp)
GGCGTGGTTCCAGGAGCGGAGGCTG
LOC_Os06g40430
OsAffx.28024.1.S1_at--630--4011Chr06:24082187..24082211 (25 bp)
CGTCCCAGCCGATGTGCGCCATGTG
LOC_Os06g40430
OsAffx.28024.1.S1_at--850--4231Chr06:24082195..24082219 (25 bp)
CCGATGTGCGCCATGTGCTGGCAGT
LOC_Os06g40430
OsAffx.28024.1.S1_at--877--9151Chr06:24082201..24082225 (25 bp)
TGCGCCATGTGCTGGCAGTGGTGGA
LOC_Os06g40430
Target Sequence 
TATCCCCTCTCCAGGCGCGACGGAGAGGCAGCGGCGCACGGCGGCCGACGGGAGAGGAGGGAGCGGCGCGGCGGCGGAGG
CACGGCTCCGGCAGCTGTGGGCGGAAGAGGAAGGGACGGCCGGAGTTGGCCCTGGCTACGACAGACGGCAGGACAGGAGC
TGCACAACCCAGGCCCCGTCGGTGCCGACTCCTTCTTGATGTCGCCGGCGCCGCCAAGGCTAACGAGGTGGACGCGGTGG
TGGAGGAGGAGGACGACGACGTACGGCGGCGCGGCGTGGTTCCAGGAGCGGAGGCTGGTGGTGGTGCTGGTGCTGCCGTC
CCAGCCGATGTGCGCCATGTGCTGGCAGTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis