Browse Element(s) Details


OsAffx.28029.1.S1_at

Description tigr:9634.m03926
TID=OsAffx.28029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4086011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein
LOC_Os06g40880Os.49993.1.S1_at9/116+24378830..24381171Polygalacturonase family protein, expressed
LOC_Os06g40890Os.53450.1.S1_at11/116+24383028..24385067Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900NANA6+24385490..24387005retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910Os.41883.1.S1_at1/116+24387284..24387874Cytidine and deoxycytidylate deaminase zinc-binding region family protein
LOC_Os06g40920OsAffx.28030.2.S1_x_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_s_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_x_at5/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.3.S1_at1/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40930OsAffx.15868.1.S1_at11/116+24395609..24396039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28029.1.S1_at--1051--10131Chr06:24369963..24369987 (25 bp)
TTCACGGTTCTGCTTAGTTTCCAAT
LOC_Os06g40860
OsAffx.28029.1.S1_at--749--1411Chr06:24369921..24369945 (25 bp)
AGACAGCCTGTATAGTTTTCATGGT
LOC_Os06g40860
OsAffx.28029.1.S1_at--451--3671Chr06:24369887..24369911 (25 bp)
CTTAGTGATTCTGAGCTCTGAGTTA
LOC_Os06g40860
OsAffx.28029.1.S1_at--49--3851Chr06:24369845..24369869 (25 bp)
CTGAAATCTGAACTGCTGGGAGCCT
LOC_Os06g40860
OsAffx.28029.1.S1_at--827--5511Chr06:24369792..24369816 (25 bp)
GAAAAGGTCCTGCATGATCTGCCAC
LOC_Os06g40860
OsAffx.28029.1.S1_at--769--6411Chr06:24369777..24369801 (25 bp)
GATCTGCCACTGAAAACTGACACCA
LOC_Os06g40860
OsAffx.28029.1.S1_at--178--7891Chr06:24369663..24369687 (25 bp)
GGTTAATGCTGGTCCAACACCATAG
LOC_Os06g40860
OsAffx.28029.1.S1_at--261--5651Chr06:24369615..24369639 (25 bp)
GACAGGATGACCTCAACTACCATGG
LOC_Os06g40860
OsAffx.28029.1.S1_at--300--2531Chr06:24369565..24369586 (22 bp)
AACTATTGGCTTCTTCCACGGGATC
LOC_Os06g40860
OsAffx.28029.1.S1_at--562--5591Chr06:24368891..24368915 (25 bp)
GAAATCTGTTGTGAGCTTGACCTGA
LOC_Os06g40860
OsAffx.28029.1.S1_at--475--6451Chr06:24368868..24368892 (25 bp)
GATCACAATCCACTACCGAATTGCT
LOC_Os06g40860
Target Sequence 
TTCACGGTTCTGCTTAGTTTCCAATGAGATGGATAGAGAATAAGACAGCCTGTATAGTTTTCATGGTTTTGCTTTTCTTA
GTGATTCTGAGCTCTGAGTTAATATTCATGTGCCATTTCTGAAATCTGAACTGCTGGGAGCCTGGATGAATACTATCATG
TATTACTCTAAGAAAAGGTCCTGCATGATCTGCCACTGAAAACTGACACCAGCTTGCACAGTGCAAAATTCATCCCATCA
ATTGGTAGGAAACAGGAATAATCACCTCAGAAAAAACAGTATAATCCAGTTTACAGCGTTGGTTAATGCTGGTCCAACAC
CATAGACTTTGTAGATGTGGTAGGCTAGGACAGGATGACCTCAACTACCATGGAGATGGAACTGTCAGACAAGCTGTCCA
CAACTATTGGCTTCTTCCACGGGATCCATGAAACCATCAAGGAGTTGATATTTGGCTCATGGTCAACAAAATAACCTTTT
AAGGGAAATCTGTTGTGAGCTTGACCTGATCACAATCCACTACCGAATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis