Browse Element(s) Details


OsAffx.28045.1.S1_at

Description tigr:9634.m04004
TID=OsAffx.28045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4156011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein
LOC_Os06g41550NANA6+24905276..24905515hypothetical protein
LOC_Os06g41560OsAffx.28045.1.S1_at11/116+24906435..24909008D-mannose binding lectin family protein
LOC_Os06g41570OsAffx.28046.1.S1_at11/116+24912100..24912582hypothetical protein
LOC_Os06g41580OsAffx.15878.1.S1_x_at11/116+24915347..24915781expressed protein
LOC_Os06g41580OsAffx.15878.1.S1_at11/116+24915347..24915781expressed protein
LOC_Os06g41590Os.11823.1.S1_at11/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41590Os.27436.2.S1_s_at1/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41600NANA6+24919867..24920145hypothetical protein
LOC_Os06g41610NANA6+24922220..24923644retrotransposon protein, putative, unclassified, expressed
LOC_Os06g41620NANA6+24925921..24926601hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_x_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41640NANA6+24929058..24934196NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28045.1.S1_at--900--5131Chr06:24906990..24907014 (25 bp)
GAACAACCCAAAGATAGCCGACTTC
LOC_Os06g41560
OsAffx.28045.1.S1_at--99--2651Chr06:24906906..24906930 (25 bp)
AACCAGAGGGTACATCGCGCCCGAG
LOC_Os06g41560
OsAffx.28045.1.S1_at--435--9051Chr06:24906803..24906827 (25 bp)
TGCAGGAGATGCCAGGACCCGATCA
LOC_Os06g41560
OsAffx.28045.1.S1_at--488--391Chr06:24906782..24906806 (25 bp)
ATCACCAGCCAGCTTCATCAGGATG
LOC_Os06g41560
OsAffx.28045.1.S1_at--757--4631Chr06:24906751..24906775 (25 bp)
GCGATTGCGATGATGACACCGTCAC
LOC_Os06g41560
OsAffx.28045.1.S1_at--142--1791Chr06:24906734..24906758 (25 bp)
ACCGTCACTCTGTTCGGGTGGGCAG
LOC_Os06g41560
OsAffx.28045.1.S1_at--143--8311Chr06:24906615..24906639 (25 bp)
GGCTTTCTGGTGTATCGTGCACAAT
LOC_Os06g41560
OsAffx.28045.1.S1_at--646--8411Chr06:24906580..24906604 (25 bp)
GGCCGACGATCCATCAAGTGGTGCA
LOC_Os06g41560
OsAffx.28045.1.S1_at--338--4231Chr06:24906512..24906536 (25 bp)
CCGAGCTATACGGATTCATCGTCGT
LOC_Os06g41560
OsAffx.28045.1.S1_at--37--7271Chr06:24906489..24906513 (25 bp)
GTCCTCGTTCATCCATACGGATTCA
LOC_Os06g41560
OsAffx.28045.1.S1_at--199--6571Chr06:24906470..24906494 (25 bp)
GATTCACCTGCTCTCAGGCCAAGAG
LOC_Os06g41560
Target Sequence 
GAACAACCCAAAGATAGCCGACTTCGGGATCTCCAGGCTCCTCGGCGATGAGCAGCTGCACACCACGGTGACCAACGTGA
GGGGAACCAGAGGGTACATCGCGCCCGAGTGGCTGCACGGCGACAGGCGCATCGACACCAAGGTGGACGTGTACAGCTTC
GGCGTCGTGCTGCTGGAGATGATTTGCTGCAGGAGATGCCAGGACCCGATCACCAGCCAGCTTCATCAGGATGACAATGG
CGATTGCGATGATGACACCGTCACTCTGTTCGGGTGGGCAGCCGGGCTGGTCAGCCATGGTAGGGTGGAGGTCCTCCTGC
GCAGCGACGATGATGCGGCGGAGGATCTGGAGAGAGTGGAGCGGTTCGCTCGTGTGGCTTTCTGGTGTATCGTGCACAAT
CCGTCGCTCCGGCCGACGATCCATCAAGTGGTGCAGATGCTGGAGGGTGTGGTCGAGGTCCACGCGCCGCCTCATCTTCC
GAGCTATACGGATTCATCGTCGTCCTCGTTCATCCATACGGATTCACCTGCTCTCAGGCCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis