Browse Element(s) Details


OsAffx.28048.2.S1_x_at

Description tigr:9631.m03919
TID=OsAffx.28048.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g081701/11NAF domain containing protein
LOC_Os05g380701/11hypothetical protein
LOC_Os02g107501/11hypothetical protein
LOC_Os06g416301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08080OsAffx.25921.1.S1_at11/114+4306203..4308461hypothetical protein
LOC_Os04g08094NANA4+4311319..4311850NA
LOC_Os04g08110Os.54504.1.S1_x_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08110OsAffx.25922.2.S1_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08120OsAffx.25936.1.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.7.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.2.S1_x_at8/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.5.S1_x_at2/114+4317877..4319054hypothetical protein
LOC_Os04g08130NANA4+4320076..4321399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.10827.1.S1_x_at8/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.46055.2.S1_x_at6/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150OsAffx.18122.1.S1_x_at1/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08160OsAffx.25922.2.S1_at11/114+4330906..4332201hypothetical protein
LOC_Os04g08170OsAffx.30829.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.30829.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08180OsAffx.3745.1.S1_at10/114+4336278..4339342expressed protein
LOC_Os04g08190Os.23157.1.S1_at11/114+4340284..4342757expressed protein
LOC_Os04g08200OsAffx.25921.2.S1_at11/114+4345963..4348188hypothetical protein
LOC_Os04g08210Os.27639.1.S1_x_at8/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210OsAffx.8980.1.S1_at6/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210Os.53731.1.S1_at2/114+4350096..4355546transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28048.2.S1_x_at--979--4771Chr03:22605808..22605947 (25 bp)
GCTCCGGCGCTCTGGAATAAGTTCA
NONE
OsAffx.28048.2.S1_x_at--1133--9271Chr03:22605806..22605945 (25 bp)
TCCGGCGCTCTGGAATAAGTTCACT
NONE
OsAffx.28048.2.S1_x_at--591--5813Chr05:22234669..22234695 (25 bp)
GACGCCGGTACACGCATGGCAATGC
LOC_Os05g38070
OsAffx.28048.2.S1_x_at--388--851Chr03:22605130..22605154 (25 bp)
ATGGCAATGCCGCCCGAGGTCTGCA
NONE
OsAffx.28048.2.S1_x_at--1095--9152Chr06:24927957..24928007 (25 bp)
TGCCGCCCGAGGTCTGCACGCGGTT
LOC_Os06g41630
OsAffx.28048.2.S1_x_at--1080--1011Chr03:22605114..22605138 (25 bp)
AGGTCTGCACGCGGTTCCACCTAAT
NONE
OsAffx.28048.2.S1_x_at--66--9771Chr03:22605093..22605117 (25 bp)
TAATCTCCCTGTCTGAGGGCTTCGA
NONE
OsAffx.28048.2.S1_x_at--203--3251Chr03:22604976..22605000 (25 bp)
CAAGCGGCGTGGTCACGCAGCTAGA
NONE
OsAffx.28048.2.S1_x_at--16--7111Chr03:22604965..22604989 (25 bp)
GTCACGCAGCTAGAGGCGCTCGCGA
NONE
OsAffx.28048.2.S1_x_at--440--1573Chr04:4333164..4333183 (20 bp)
AGCTAGAGGCGCTCGCGACGGGCGG
LOC_Os04g08170
OsAffx.28048.2.S1_x_at--899--3491Chr03:22604882..22604906 (25 bp)
CATGGCGGCCGATCGACGTCTTCAG
NONE
Target Sequence 
GCTCCGGCGCTCTGGAATAAGTTCACTTTAGGTCCCTCTATTTGTCGTCCAGTCCGATTTTCGTCCCTTGACCGTAAAAC
CGGCGGACGGCGTGGGTGGGAGGCGGAGCAGGCGAGCTCCGGCGGTGGCGGAGGGCGTGGTCGGCACCGCCCCCTGACCG
GAGCACCACCGGTCCGCGTGAAGGCAGATCTGGGGAGCGCCCGTCCCGCGCCCCATCATCGCCGACCCCGTGCCGACGCC
GGTACACGCATGGCAATGCCGCCCGAGGTCTGCACGCGGTTCCACCTAATCTCCCTGTCTGAGGGCTTCGACCTGTCGTC
GCTGTTCGAGCATGACCCCGCCGTGTCGCCAGGGCGAGCCACGGCGCGCGCGGGCAGCACGCGGTTCGCGACACGGGAGG
CGGCAAGCGGCGTGGTCACGCAGCTAGAGGCGCTCGCGACGGGCGGCGCCACGCCCACGCGCGTGGCGAGGAGCGGCGCG
CGCGGGGTGCGGCTCGCCATGGCGGCCGATCGACGTCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28048.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis