Browse Element(s) Details


OsAffx.28116.1.S1_x_at

Description tigr:9634.m04407
TID=OsAffx.28116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4538011/11Vacuolar sorting receptor 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45360Os.51301.1.S1_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360Os.51301.1.S1_x_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370Os.15065.1.S1_at11/116+27427893..27430110fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380OsAffx.28116.1.S1_s_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380OsAffx.28116.1.S1_x_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.17353.1.S1_at10/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.20764.1.S1_s_at1/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390OsAffx.15936.1.S1_at10/116+27440488..27443852expressed protein
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28116.1.S1_x_at--555--8531Chr06:27434873..27434897 (25 bp)
TGGACTGGCGCGAGTCGATGCCCCA
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--729--8531Chr06:27434912..27434936 (25 bp)
TGGAGTACGAGCTGTGGACCAACAG
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--443--2151Chr06:27434933..27434957 (25 bp)
ACAGCAACGACGAGTGCGGCGCCCG
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--93--4571Chr06:27434951..27434975 (25 bp)
GCGCCCGGTGCGACGAGCAGATGGA
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--60--1531Chr06:27434966..27434990 (25 bp)
AGCAGATGGAGTTCGTCCGCGGCTT
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--590--1311Chr06:27434969..27434993 (25 bp)
AGATGGAGTTCGTCCGCGGCTTCCG
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--1046--7231Chr06:27435096..27435120 (25 bp)
GTCCCAGTGCATCAACCATGGCAGG
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--1065--9711Chr06:27435107..27435131 (25 bp)
TCAACCATGGCAGGCAAGTGACTTC
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--348--7059Chr06:27435264..27435288 (25 bp)
GTAACATCTACAACACCAAATTGGT
LOC_Os06g45380
OsAffx.28116.1.S1_x_at--960--9833Chr09:13121896..13121992 (25 bp)
TACAACACCAAATTGGTTTCACTAA
NONE
OsAffx.28116.1.S1_x_at--399--7872Chr06:27435286..27435310 (25 bp)
GGTTTCACTAAAACTAACATTTATG
LOC_Os06g45380
Target Sequence 
TGGACTGGCGCGAGTCGATGCCCCACCCCGACGAGCGGGTGGAGTACGAGCTGTGGACCAACAGCAACGACGAGTGCGGC
GCCCGGTGCGACGAGCAGATGGAGTTCGTCCGCGGCTTCCGCGGCCACGCCCAGATCATGGAGAGAGGTGGCTACGCCCT
CTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGGCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACC
ATGGCAGGCAAGTGACTTCCTTCGTTTCAGATTATAAATCGTTTCGATTTCTTTTTTTTTAATCATACTTCCTTCATTTT
ATATTATTATTACGTCGTTTTCACTTTTCTTATATCCAAACTTAAATTTGATTAAGTTTATAGAAAAATTAGTAACATCT
ACAACACCAAATTGGTTTCACTAAAACTAACATTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28116.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis