Browse Element(s) Details


OsAffx.28137.1.S1_at

Description tigr:9634.m04535
TID=OsAffx.28137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g025201/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein
LOC_Os04g02539NANA4+928966..929187NA
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28137.1.S1_at--162--47311Chr07:22391286..22391305 (20 bp)
GCTGGGTTCCACAATGTCATACCAA
NONE
OsAffx.28137.1.S1_at--400--6918Chr01:31129623..31129647 (25 bp)
GTATGGTCTACCTCTTCTGGATTAA
NONE
OsAffx.28137.1.S1_at--942--56914Chr09:12095421..12095445 (25 bp)
GACTATTTGGCGCACATTGATTTTA
NONE
OsAffx.28137.1.S1_at--101--7631NONE
GGGAAATTCGTCTCAAGAGGCCTAT
NONE
OsAffx.28137.1.S1_at--802--9631Chr06:28300815..28300839 (25 bp)
TCAGTTAGGCCCCATGGATCTGGAT
NONE
OsAffx.28137.1.S1_at--975--2371Chr06:28300788..28300812 (25 bp)
AAACCCAGATCGTAATTGGCTCTCC
NONE
OsAffx.28137.1.S1_at--58--471Chr06:28300733..28300757 (25 bp)
ATCTCGATCACCTCAGCATTATTTA
NONE
OsAffx.28137.1.S1_at--393--3451Chr06:28300680..28300704 (25 bp)
CAGTAGGATGTTGGGTCTTCTTCTT
NONE
OsAffx.28137.1.S1_at--261--3131Chr06:28300648..28300672 (25 bp)
AATTTCATATCCATCTTTCTCCTTT
NONE
OsAffx.28137.1.S1_at--971--10271Chr06:28300626..28300650 (25 bp)
TTTGCTGGCTCATCAGTCGTCTAGG
NONE
OsAffx.28137.1.S1_at--47--891Chr06:28300604..28300628 (25 bp)
AGGCCTCAAGCCCATTTGTTTGGCA
NONE
Target Sequence 
GCTGGGTTCCACAATGTCATACCAACAGATTTAGGATTTGTTCCCAATGGCGAGTTTGAAGTATGGTCTACCTCTTCTGG
ATTAAGGGTGTTATGGATTATAGTCCAAGTGACTATTTGGCGCACATTGATTTTATCATCACGAGGTTCTTTGGAGATTG
AAGATTTTTATGCTACAAGGGAAATTCGTCTCAAGAGGCCTATTCAGTTAGGCCCCATGGATCTGGATCCAAACCCAGAT
CGTAATTGGCTCTCCGATGAGATGCGAGCTGGCAGCACCACAACAATCTCGATCACCTCAGCATTATTTATACTTGCATA
TGACTCAAGTGAGATGTGCAGTAGGATGTTGGGTCTTCTTCTTTCTCCTCAATTTCATATCCATCTTTCTCCTTTGCTGG
CTCATCAGTCGTCTAGGCCTCAAGCCCATTTGTTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis