Browse Element(s) Details


OsAffx.28173.1.S1_at

Description tigr:9634.m04726
TID=OsAffx.28173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4857011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48550OsAffx.15986.1.S1_at11/116+29376998..29377953hypothetical protein
LOC_Os06g48560OsAffx.15987.1.S1_at11/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.20808.1.S1_x_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.15863.1.S1_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48570Os.24710.1.A1_s_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570OsAffx.28173.1.S1_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28173.1.S1_at--814--8031Chr06:29382805..29382829 (25 bp)
GGAGATGTGAAAGCTGTCTTTCTTG
LOC_Os06g48570
OsAffx.28173.1.S1_at--873--271Chr06:29382739..29382763 (25 bp)
ATATGGTTCTGTTATGGTGGTGGCT
LOC_Os06g48570
OsAffx.28173.1.S1_at--241--10111Chr06:29382738..29382762 (25 bp)
TATGGTTCTGTTATGGTGGTGGCTT
LOC_Os06g48570
OsAffx.28173.1.S1_at--562--811Chr06:29382737..29382761 (25 bp)
ATGGTTCTGTTATGGTGGTGGCTTT
LOC_Os06g48570
OsAffx.28173.1.S1_at--984--8571Chr06:29382736..29382760 (25 bp)
TGGTTCTGTTATGGTGGTGGCTTTG
LOC_Os06g48570
OsAffx.28173.1.S1_at--1029--7891Chr06:29382735..29382759 (25 bp)
GGTTCTGTTATGGTGGTGGCTTTGG
LOC_Os06g48570
OsAffx.28173.1.S1_at--494--7731Chr06:29382724..29382748 (25 bp)
GGTGGTGGCTTTGGTTATCATGCCT
LOC_Os06g48570
OsAffx.28173.1.S1_at--795--7491Chr06:29382723..29382747 (25 bp)
GTGGTGGCTTTGGTTATCATGCCTA
LOC_Os06g48570
OsAffx.28173.1.S1_at--319--8631Chr06:29382722..29382746 (25 bp)
TGGTGGCTTTGGTTATCATGCCTAT
LOC_Os06g48570
OsAffx.28173.1.S1_at--432--7731Chr06:29382721..29382745 (25 bp)
GGTGGCTTTGGTTATCATGCCTATG
LOC_Os06g48570
OsAffx.28173.1.S1_at--850--7531Chr06:29382720..29382744 (25 bp)
GTGGCTTTGGTTATCATGCCTATGG
LOC_Os06g48570
Target Sequence 
GGAGATGTGAAAGCTGTCTTTCTTGGCCATGACCATCTTAATGATTTTTGTGGCGACCTTAATGGGATATGGTTCTGTTA
TGGTGGTGGCTTTGGTTATCATGCCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis