Browse Element(s) Details

OsAffx.28175.1.S1_s_at

Description

tigr:9634.m04744
TID=OsAffx.28175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48740	11/11	hypothetical protein
LOC_Os03g52210	11/11	retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06830	11/11	hypothetical protein
LOC_Os03g18050	1/11	Auxin responsive protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48720	Os.54979.1.S1_at	11/11	6	+	29476951..29479907	Cadmium/zinc-transporting ATPase 4, putative, expressed
LOC_Os06g48730	NA	NA	6	+	29496452..29497009	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g48740	OsAffx.28175.1.S1_s_at	11/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_x_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009733	biological_process	response to auxin stimulus

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28175.1.S1_s_at--1068--523	3	Chr06:29501555..29501579 (25 bp)	GAATCAGCCATTAGTTTTCCACTGT	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--349--967	3	Chr06:29501558..29501582 (25 bp)	TCAGCCATTAGTTTTCCACTGTGTC	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--382--1039	3	Chr06:29501569..29501593 (25 bp)	TTTTCCACTGTGTCGGAGAATGGCG	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--121--437	3	Chr06:29501573..29501597 (25 bp)	CCACTGTGTCGGAGAATGGCGAGCT	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--114--797	3	Chr06:29501603..29501627 (25 bp)	GGATCGGATGCCACGGCCGGCCGAG	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--881--943	3	Chr06:29501671..29501695 (25 bp)	TCGGTGTCAGCGTAGATGCTGCAGT	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--362--745	3	Chr06:29501674..29501698 (25 bp)	GTGTCAGCGTAGATGCTGCAGTCCT	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--805--163	3	Chr06:29501679..29501703 (25 bp)	AGCGTAGATGCTGCAGTCCTGGAAC	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--85--477	3	Chr06:29501688..29501712 (25 bp)	GCTGCAGTCCTGGAACGAGAAGCCT	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--689--389	3	Chr06:29501711..29501735 (25 bp)	CTGTGGCGCGGGACTGGGCGGTGAT	LOC_Os06g48740
OsAffx.28175.1.S1_s_at--738--409	4	Chr06:29501768..29501792 (25 bp)	CGACGATGTCGCAGTGCTGGAAGAC	LOC_Os06g48740

Target Sequence

GAATCAGCCATTAGTTTTCCACTGTGTCGGAGAATGGCGAGCTGCTCAGGATCGGATGCCACGGCCGGCCGAGGTAGGTC
TCCACGCTGTTGCCGGCGGGGGCACCGCGGAGGAGGTCGGTGTCAGCGTAGATGCTGCAGTCCTGGAACGAGAAGCCTGT
GGCGCGGGACTGGGCGGTGATGGTGTTCTGCTGGCCGCGGAGGGGGAGGCGTGCGACGATGTCGCAGTGCTGGAAGAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis