Browse Element(s) Details


OsAffx.28293.1.S1_at

Description tigr:9635.m00518
TID=OsAffx.28293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0580010/11Lactoylglutathione lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05750OsAffx.8469.1.S1_x_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05750OsAffx.28492.1.S1_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009407biological_processtoxin catabolism
GO:0042631biological_processcellular response to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28293.1.S1_at--815--6111Chr07:2789827..2789851 (25 bp)
GAGTGACCTCGTGCTCAGGATGAAC
LOC_Os07g05800
OsAffx.28293.1.S1_at--220--9771Chr07:2789983..2790007 (25 bp)
TAAGAGGGCCAGTGCTCGCTTTTGG
LOC_Os07g05800
OsAffx.28293.1.S1_at--440--10251Chr07:2790003..2790027 (25 bp)
TTTGGGCTGACTTCGTTGACCATGA
LOC_Os07g05800
OsAffx.28293.1.S1_at--445--5851NONE
GACCATGAGGTGTTCAGCACGCAAA
NONE
OsAffx.28293.1.S1_at--67--8271Chr07:2790579..2790603 (25 bp)
GGCAGAGCTCCTAGATCAACTGAGA
LOC_Os07g05800
OsAffx.28293.1.S1_at--929--2551Chr07:2790596..2790620 (25 bp)
AACTGAGACGCCTCGAGGGAGTTCT
LOC_Os07g05800
OsAffx.28293.1.S1_at--1067--9271Chr07:2790640..2790664 (25 bp)
TCCGGTGACGAGTTTGGGTTCCTAG
LOC_Os07g05800
OsAffx.28293.1.S1_at--450--8631Chr07:2790654..2790678 (25 bp)
TGGGTTCCTAGACATCGTGCTCATA
LOC_Os07g05800
OsAffx.28293.1.S1_at--371--311Chr07:2790676..2790700 (25 bp)
ATACCTTTCTCAAGCATGTTCCATG
LOC_Os07g05800
OsAffx.28293.1.S1_at--928--711Chr07:2790691..2790715 (25 bp)
ATGTTCCATGGTTACAAGCAGCATA
LOC_Os07g05800
OsAffx.28293.1.S1_at--672--1371Chr07:2790784..2790808 (25 bp)
AGAGCGTGAGGCAAGTCCTTCCCGA
LOC_Os07g05800
Target Sequence 
GAGTGACCTCGTGCTCAGGATGAACCCGGTCCACCGCTCCGTCCCCATCCTGATTCATCGTGGCCGTCCGATCTGCGGCT
CCATCAACATCCTCCAGTACATCGACGAGGTCTGGGCCAAACGGGTCGGCACCCGCTTGCTTCCGCCTGACCCGCTTAAG
AGGGCCAGTGCTCGCTTTTGGGCTGACTTCGTTGACCATGAGGTGTTCAGCACGCAAACGAGATTCTTAAAGAGCAAGGG
CGAGGAGAAGGAGATGGCCAAGGCAGAGCTCCTAGATCAACTGAGACGCCTCGAGGGAGTTCTCGGGGACAGGAGCTTCT
TCTCCGGTGACGAGTTTGGGTTCCTAGACATCGTGCTCATACCTTTCTCAAGCATGTTCCATGGTTACAAGCAGCATATG
TGGGTGAAGAGGTGCAAAGAAAGGGAGAGCGTGAGGCAAGTCCTTCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis