Browse Element(s) Details


OsAffx.28294.3.S1_x_at

Description tigr:9633.m03383
TID=OsAffx.28294.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3624011/11hypothetical protein
LOC_Os07g058408/11expressed protein
LOC_Os11g417705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36190Os.15216.1.S1_at11/115+21377109..21380219Tubby protein, putative, expressed
LOC_Os05g36200NANA5+21383025..21386261retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36210OsAffx.16109.1.S1_at11/115+21390828..21391733hypothetical protein
LOC_Os05g36220OsAffx.24383.1.S1_at3/115+21391977..21394211transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_x_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28294.3.S1_x_at--435--832Chr05:21400054..21400078 (25 bp)
ATGGATTTTCATACCTTGCAGATTA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--789--2213Chr05:21400121..21400145 (25 bp)
ACAAGCACGCCTTAATTCTGAGGAT
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--459--6112Chr05:21400143..21400167 (25 bp)
GATGTTGCCCAAAACCGAGGAGGTT
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--971--993Chr05:21400163..21400187 (25 bp)
AGGTTCCCGGCCATTCACAGAGACA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--104--213Chr05:21400364..21400388 (25 bp)
ATATTGGACCAATCCCAAGCCAGAA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--485--2411Chr05:21400394..21400875 (25 bp)
AAAAGCGTGTGGCACTTTATGAAAA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--183--5512Chr05:21401431..21401455 (25 bp)
GAACAAGTTCTTCCCATGTAGTCTC
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--641--3511Chr05:21401445..21401469 (25 bp)
CATGTAGTCTCACACAGCCAGTTGA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--460--2972Chr05:21401492..21401516 (25 bp)
AATGGATGTAACACCGCCTCTGGCA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--84--1813Chr05:21401504..21401528 (25 bp)
ACCGCCTCTGGCAATGGTGGCAATA
LOC_Os05g36240
OsAffx.28294.3.S1_x_at--369--1952Chr05:21401532..21401556 (25 bp)
ACGGCGACAACAACTGCAATGGCAA
LOC_Os05g36240
Target Sequence 
ATGGATTTTCATACCTTGCAGATTATTGGTGTACTGAAGAGTTCAAGGCAAAAAGAAAGAGAGGCCAACAAGCACGCCTT
AATTCTGAGGATGTTGCCCAAAACCGAGGAGGTTCCCGGCCATTCACAGAGACACAACAATATATGGGAGTAAAATTTGG
ACCTGAGAAAGCTACAACACTAAACACTTTTAGTGCAATGAAGACTGGCTTTAAAAATATAGATAATGATGGAAATATTG
GACCAATCCCAAGCCAGAAAGCACAAAAGCGTGTGGCACTTTATGAAAAGTTGGGTGAACAAGTACCACAAGAATTGGAC
TGTCCAGTAGAAGAGGAAGATCCATTTGCACAGAAAATTGGTTTAGAAGGGAACAAGTTCTTCCCATGTAGTCTCACACA
GCCAGTTGAGGACAATGGGAACAACAACAGCAATGGATGTAACACCGCCTCTGGCAATGGTGGCAATAACAACGGCGACA
ACAACTGCAATGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28294.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis