Browse Element(s) Details


OsAffx.28327.1.S1_x_at

Description tigr:9635.m00702
TID=OsAffx.28327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087378 galactose-1-phosphate uridyl transferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0755011/11galactose-1-phosphate uridyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed
LOC_Os07g07570OsAffx.5243.1.S1_at11/117+3784891..3785235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28327.1.S1_x_at--698--3811Chr07:3763018..3763042 (25 bp)
CTCCTCATGGATGGTTGGTACTTAC
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--436--7011Chr07:3763001..3763025 (25 bp)
GTACTTACCACCAGAGGAAACAGGA
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--1009--2851Chr07:3762284..3762308 (25 bp)
AAGTGCAGCCTTTGTGAGTTCCAGT
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--815--3171Chr07:3762219..3762243 (25 bp)
AATTGTCCCTTTTGCAGCATCGTAT
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--783--10211Chr07:3762177..3762201 (25 bp)
TATTCCCAGACAGCATAGTTCCTAT
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--1113--9911Chr07:3761175..3761196 (22 bp)
TACGGCACTGGATCTTGGGTCTTTA
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--359--4051Chr07:3761112..3761136 (25 bp)
CGACCCTCCATTCAACTTTATGATA
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--934--8831Chr07:3761092..3761116 (25 bp)
TGATACACAGCGCACCATTTGGAGT
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--26--231Chr07:3761076..3761100 (25 bp)
ATTTGGAGTCTCATCATCCTGTCTT
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--398--31Chr07:3761041..3761065 (25 bp)
ATTGGTTCCTTCAGATAGTGCCCCA
LOC_Os07g07550
OsAffx.28327.1.S1_x_at--9--291Chr07:3761027..3761051 (25 bp)
ATAGTGCCCCAGTTGAGTTTAATCG
LOC_Os07g07550
Target Sequence 
CTCCTCATGGATGGTTGGTACTTACCACCAGAGGAAACAGGAATGGTATTTAAGAACCATGGTGCATCTGCTGGGGCCTC
AATGGCACACTCACATAGCCAGATGTTAGGAACTCCCTTTGTCCCTCCCTCTGTTACCACCCGGCTTAACTGCATGAAGG
AGGTTTTCGAGAGATTGGGGAAGTGCAGCCTTTGTGAGTTCCAGTCCAAGGATATTTTGGTCCGTGAAACACACAATTTT
TCTGCAATTGTCCCTTTTGCAGCATCGTATCCTTTTGAGATATGGATTATTCCCAGACAGCATAGTTCCTATTTCCATGA
AATAGACAAGGATACGGCACTGGATCTTGGGTCTTTATTGAGGACCATGCTGGCAAAGTTGTCTAAGCAGCTCAACGACC
CTCCATTCAACTTTATGATACACAGCGCACCATTTGGAGTCTCATCATCCTGTCTTCCTTACACACATTGGTTCCTTCAG
ATAGTGCCCCAGTTGAGTTTAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28327.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis