Browse Element(s) Details


OsAffx.2833.1.S1_at

Description tigr:9630.m03103
TID=OsAffx.2833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3271011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32690OsAffx.24543.1.S1_at11/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_x_at7/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690OsAffx.32212.1.A1_at2/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_at1/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32700Os.20902.1.A1_at1/112+19417381..19418082Autophagy-related protein 8 precursor, putative
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2833.1.S1_at--779--8871Chr02:19426739..19426763 (25 bp)
TGAGAAGGTCAACCGCCTAGGTACA
LOC_Os02g32710
OsAffx.2833.1.S1_at--645--2591Chr02:19426685..19426709 (25 bp)
AACGACTAAGGTGTGTGCATCCAGA
LOC_Os02g32710
OsAffx.2833.1.S1_at--745--6611Chr02:19426648..19426672 (25 bp)
GTTGGATCTAGTTTTCCTAGGCCAA
LOC_Os02g32710
OsAffx.2833.1.S1_at--392--6411Chr02:19426605..19426629 (25 bp)
GATCTGGCAATGTTGACCATCTCTA
LOC_Os02g32710
OsAffx.2833.1.S1_at--978--451Chr02:19426519..19426611 (25 bp)
ATCTCTATGCGTCAGGTGGCGTCGA
LOC_Os02g32710
OsAffx.2833.1.S1_at--177--1931Chr02:19426421..19426445 (25 bp)
ACGGTCATAGACATAGCTGGCAGAG
LOC_Os02g32710
OsAffx.2833.1.S1_at--643--2891Chr02:19426329..19426353 (25 bp)
AAGGGTGACTCGGATGCGCACGATT
LOC_Os02g32710
OsAffx.2833.1.S1_at--1119--9111Chr02:19426305..19426329 (25 bp)
TGCTGGTGCTTCTTGTTGGGCGAAA
LOC_Os02g32710
OsAffx.2833.1.S1_at--98--3351Chr02:19426037..19426058 (22 bp)
CACGGTCTTGTGGTAGCGAGCTAAC
LOC_Os02g32710
OsAffx.2833.1.S1_at--1137--4571Chr02:19426022..19426046 (25 bp)
GCGAGCTAACCCATTTGGTGGAGAT
LOC_Os02g32710
OsAffx.2833.1.S1_at--872--7771Chr02:19425995..19426019 (25 bp)
GGTGCACGAGGCTTCCATGGCTCAA
LOC_Os02g32710
Target Sequence 
TGAGAAGGTCAACCGCCTAGGTACATGGCGGTGGCGTAGGCTAGAGGTGGTGGCAACGACTAAGGTGTGTGCATCCAGAG
GCGAGGGGATAGTTGGATCTAGTTTTCCTAGGCCAAATATGGTCAAGGAAACCAGATCTGGCAATGTTGACCATCTCTAT
GCGTCAGGTGGCGTCGACACAAGGTGGCTGCGGAGGAGTGGAACTGGAGTAGGGTGGAGTCGGCATGGACACATGGTTGG
CAGGTGGGGCACGGTCATAGACATAGCTGGCAGAGAGCTGGAGAGGCAACATGAAGAGGTTGCATGGAGAGATAAGAGGG
GCGCTTGGAGAAGACACCGTAGAAGGGTGACTCGGATGCGCACGATTGCTGGTGCTTCTTGTTGGGCGAAAGGCCAAGTA
GTGGCTCAAGCAATGAGGACACGGTCTTGTGGTAGCGAGCTAACCCATTTGGTGGAGATGCGGTGCACGAGGCTTCCATG
GCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis