Browse Element(s) Details


OsAffx.28330.1.S1_at

Description tigr:9635.m00713
TID=OsAffx.28330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g076407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein
LOC_Os07g07610Os.20376.1.S1_at11/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07610Os.40201.1.S1_at1/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28330.1.S1_at--538--9951Chr07:3823943..3823967 (25 bp)
TACCGCCGTCATTGACATCCCAATG
NONE
OsAffx.28330.1.S1_at--65--9631Chr07:3823911..3823935 (25 bp)
TCATGGTGATGATAAGGCCTGCTAA
NONE
OsAffx.28330.1.S1_at--984--711Chr07:3823903..3823927 (25 bp)
ATGATAAGGCCTGCTAAGCCCCTGG
NONE
OsAffx.28330.1.S1_at--255--9091Chr07:3823892..3823916 (25 bp)
TGCTAAGCCCCTGGCGATGGCGGAT
NONE
OsAffx.28330.1.S1_at--478--2611Chr07:3823847..3823871 (25 bp)
AACGCCAGATCCACCGTTATTGAGG
LOC_Os07g07640
OsAffx.28330.1.S1_at--833--1291Chr07:3823841..3823865 (25 bp)
AGATCCACCGTTATTGAGGGCGCAG
LOC_Os07g07640
OsAffx.28330.1.S1_at--955--6111Chr07:3823826..3823850 (25 bp)
GAGGGCGCAGGTCGATGGTGGTGTG
LOC_Os07g07640
OsAffx.28330.1.S1_at--490--7391Chr07:3823809..3823833 (25 bp)
GTGGTGTGGCTATGGTTGACGACGA
LOC_Os07g07640
OsAffx.28330.1.S1_at--170--1871Chr07:3823791..3823815 (25 bp)
ACGACGATGACAGTGTGGCTCGGCC
LOC_Os07g07640
OsAffx.28330.1.S1_at--866--4491Chr07:3823769..3823793 (25 bp)
GCCGTGGTGGCGACAGTTGTCAACT
LOC_Os07g07640
OsAffx.28330.1.S1_at--271--7551Chr07:3823763..3823787 (25 bp)
GTGGCGACAGTTGTCAACTAGGAGT
LOC_Os07g07640
Target Sequence 
TACCGCCGTCATTGACATCCCAATGCCCAGGATCATGGTGATGATAAGGCCTGCTAAGCCCCTGGCGATGGCGGATTCGT
CGCTCCCGAGGCCACCAACGCCAGATCCACCGTTATTGAGGGCGCAGGTCGATGGTGGTGTGGCTATGGTTGACGACGAT
GACAGTGTGGCTCGGCCGTGGTGGCGACAGTTGTCAACTAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis