Browse Element(s) Details


OsAffx.28389.1.S1_at

Description tigr:9635.m01031
TID=OsAffx.28389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1064011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein
LOC_Os07g10650OsAffx.5286.1.S1_at11/117+5784632..5784928hypothetical protein
LOC_Os07g10660Os.16825.1.S1_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10660OsAffx.5287.1.S1_s_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein
LOC_Os07g10680OsAffx.28391.1.S1_x_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10680OsAffx.28393.1.S1_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10690Os.27504.1.S1_at11/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.49888.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690OsAffx.28390.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.32108.1.S1_s_at1/117+5803688..5809674NLI interacting factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28389.1.S1_at--873--9691Chr07:5779033..5779057 (25 bp)
TCACAGATCCAGCAGCGATGGCAGC
LOC_Os07g10640
OsAffx.28389.1.S1_at--707--9171Chr07:5778936..5778960 (25 bp)
TGCCTGGTGGCGGATCCAAAGACCC
LOC_Os07g10640
OsAffx.28389.1.S1_at--115--4691Chr07:5778927..5778951 (25 bp)
GCGGATCCAAAGACCCTGATCTTGG
LOC_Os07g10640
OsAffx.28389.1.S1_at--660--8831Chr07:5778911..5778935 (25 bp)
TGATCTTGGGAGTGGCATGTCCGCC
LOC_Os07g10640
OsAffx.28389.1.S1_at--365--771Chr07:5778895..5778919 (25 bp)
ATGTCCGCCGCCAGTAACGTTGGGT
LOC_Os07g10640
OsAffx.28389.1.S1_at--228--10851Chr07:5778787..5778900 (25 bp)
TTGGGTGCGGCGGACGACATAACTC
LOC_Os07g10640
OsAffx.28389.1.S1_at--914--5672Chr07:5778772..5778796 (25 bp)
GACATAACTCACCACTTGCGAAAAT
LOC_Os07g10640
OsAffx.28389.1.S1_at--728--9591Chr07:5778748..5778772 (25 bp)
TCATTTTTCGTGTTGCTTGCATGGC
LOC_Os07g10640
OsAffx.28389.1.S1_at--269--2091Chr07:5778361..5778732 (25 bp)
ACATATACGGGAATTGCTTGGTCTC
LOC_Os07g10640
OsAffx.28389.1.S1_at--155--5211Chr07:5778351..5778375 (25 bp)
GAATTGCTTGGTCTCCACAGGACAA
LOC_Os07g10640
OsAffx.28389.1.S1_at--552--7791Chr07:5778342..5778366 (25 bp)
GGTCTCCACAGGACAAAAATTCCCT
LOC_Os07g10640
Target Sequence 
TCACAGATCCAGCAGCGATGGCAGCGGGAGGCGCGGATCCACCGTCGCAGGCCTCCCCCTTCTCATGAATCCGACGATGA
AAATGATGGTGGCAAGCTGCCTGGTGGCGGATCCAAAGACCCTGATCTTGGGAGTGGCATGTCCGCCGCCAGTAACGTTG
GGTGCGGCGGACGACATAACTCACCACTTGCGAAAATCATTTTTCGTGTTGCTTGCATGGCAAAATGTTATTTTGTACAT
ATACGGGAATTGCTTGGTCTCCACAGGACAAAAATTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis