Browse Element(s) Details


OsAffx.28430.1.S1_at

Description tigr:9635.m01332
TID=OsAffx.28430.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28430.1.S1_at--424--10071Chr07:7731501..7731525 (25 bp)
TAGTGGCTACCGTCGGCGCTGACGA
LOC_Os07g13500
OsAffx.28430.1.S1_at--36--1871Chr07:7731480..7731504 (25 bp)
ACGACGTGCGCCAGGTGCTTCATGA
LOC_Os07g13500
OsAffx.28430.1.S1_at--249--4431Chr07:7731471..7731495 (25 bp)
GCCAGGTGCTTCATGAGCCGCTCTT
LOC_Os07g13500
OsAffx.28430.1.S1_at--1118--9151Chr07:7731336..7731360 (25 bp)
TGCCGAACACGATCGCCGCTGACGT
LOC_Os07g13500
OsAffx.28430.1.S1_at--984--1871Chr07:7731328..7731352 (25 bp)
ACGATCGCCGCTGACGTGTTGTCGT
LOC_Os07g13500
OsAffx.28430.1.S1_at--437--4751Chr07:7731319..7731343 (25 bp)
GCTGACGTGTTGTCGTCGCGTAGCA
LOC_Os07g13500
OsAffx.28430.1.S1_at--41--10831Chr07:7731310..7731334 (25 bp)
TTGTCGTCGCGTAGCAGGCCGGACC
LOC_Os07g13500
OsAffx.28430.1.S1_at--221--951Chr07:7731269..7731293 (25 bp)
AGGAAGCGGTGGCATGCCCAAGGCT
LOC_Os07g13500
OsAffx.28430.1.S1_at--358--591Chr07:7731256..7731280 (25 bp)
ATGCCCAAGGCTGCCATCGTGGTCG
LOC_Os07g13500
OsAffx.28430.1.S1_at--425--7791Chr07:7731212..7731236 (25 bp)
GGTCCTCGCGCTACTCGCCATTGTG
LOC_Os07g13500
OsAffx.28430.1.S1_at--457--9891Chr07:7731201..7731225 (25 bp)
TACTCGCCATTGTGGTCGCGTTCCT
LOC_Os07g13500
Target Sequence 
TAGTGGCTACCGTCGGCGCTGACGACGTGCGCCAGGTGCTTCATGAGCCGCTCTTCCCCATCGAGTGGACACCGTCACCG
TCCTCGGACTTCTCCTCCGACCCCCCAACACCCGCCACCGCCACCCTCGTGGACAACAGCAGCCCAAGGCTTCTCCCCGC
GCCGCTGCCGAACACGATCGCCGCTGACGTGTTGTCGTCGCGTAGCAGGCCGGACCCGCAGGCGTCGTGTGGAGGAAGCG
GTGGCATGCCCAAGGCTGCCATCGTGGTCGCCTCCGTTGCCGTCGCCGCGGTCCTCGCGCTACTCGCCATTGTGGTCGCG
TTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis