Browse Element(s) Details


OsAffx.28434.1.S1_at

Description tigr:9635.m01374
TID=OsAffx.28434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1391011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13850OsAffx.25936.7.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.5.S1_x_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.2.S1_x_at5/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_at1/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.10827.1.S1_x_at4/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.46055.2.S1_x_at3/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13870Os.36460.2.S1_x_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13870Os.36460.1.S1_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13880OsAffx.16249.1.S1_at11/117+7939884..7940728Soluble starch synthase 2-3, chloroplast precursor, putative
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein
LOC_Os07g13910OsAffx.28434.1.S1_at11/117+7951250..7952616hypothetical protein
LOC_Os07g13920OsAffx.5322.1.S1_at11/117+7954360..7955484No apical meristem protein
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28434.1.S1_at--213--6331Chr07:7951727..7951751 (25 bp)
GATGCTAAATTGCTAATAGTACTAA
LOC_Os07g13910
OsAffx.28434.1.S1_at--939--4831Chr07:7951738..7951762 (25 bp)
GCTAATAGTACTAACAGTGTTCGAT
LOC_Os07g13910
OsAffx.28434.1.S1_at--729--6711Chr07:7951756..7951780 (25 bp)
GTTCGATAACACAGCTGTAATGCCT
LOC_Os07g13910
OsAffx.28434.1.S1_at--532--2471Chr07:7951763..7951787 (25 bp)
AACACAGCTGTAATGCCTCAATTTT
LOC_Os07g13910
OsAffx.28434.1.S1_at--627--7071Chr07:7951772..7951796 (25 bp)
GTAATGCCTCAATTTTATCTTTCAA
LOC_Os07g13910
OsAffx.28434.1.S1_at--1136--3111Chr07:7951948..7951972 (25 bp)
AATTTGGTGAAATTCACTTGACACA
LOC_Os07g13910
OsAffx.28434.1.S1_at--711--9671Chr07:7951961..7951985 (25 bp)
TCACTTGACACAAGTGTTACTGGCA
LOC_Os07g13910
OsAffx.28434.1.S1_at--130--10831Chr07:7952174..7952198 (25 bp)
TTGTGGTCAGTCAGTTTTGCGAATA
LOC_Os07g13910
OsAffx.28434.1.S1_at--271--6811Chr07:7952187..7952211 (25 bp)
GTTTTGCGAATAATGCTCACTTCAC
LOC_Os07g13910
OsAffx.28434.1.S1_at--949--351Chr07:7952196..7952220 (25 bp)
ATAATGCTCACTTCACTTGGGAGGT
LOC_Os07g13910
OsAffx.28434.1.S1_at--499--4831Chr07:7952201..7952225 (25 bp)
GCTCACTTCACTTGGGAGGTTTTAC
LOC_Os07g13910
Target Sequence 
GATGCTAAATTGCTAATAGTACTAACAGTGTTCGATAACACAGCTGTAATGCCTCAATTTTATCTTTCAATTGAACTATT
TGGAAAGGATGAGGAAATTAAATTTGGTGAAATTCACTTGACACAAGTGTTACTGGCANNNTTGTGGTCAGTCAGTTTTG
CGAATAATGCTCACTTCACTTGGGAGGTTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis