Browse Element(s) Details


OsAffx.28454.2.S1_at

Description tigr:9635.m01503
TID=OsAffx.28454.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g151308/11hypothetical protein
LOC_Os06g292601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15100NANA7+8659563..8660360hypothetical protein
LOC_Os07g15110Os.51185.2.S1_at1/117+8663690..8668779retrotransposon protein, putative, unclassified
LOC_Os07g15120NANA7+8673376..8674786transposon protein, putative, unclassified
LOC_Os07g15130OsAffx.28454.1.S1_s_at11/117+8679898..8681132hypothetical protein
LOC_Os07g15130OsAffx.28454.1.S1_at8/117+8679898..8681132hypothetical protein
LOC_Os07g15130OsAffx.28454.2.S1_at8/117+8679898..8681132hypothetical protein
LOC_Os07g15140Os.47463.1.S1_x_at6/117+8688022..8691254transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15140Os.14491.2.S1_x_at4/117+8688022..8691254transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.27026.1.A1_x_at3/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.40028.1.A1_at2/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.27037.1.A1_at1/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150OsAffx.16407.2.S1_x_at1/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15160Os.51229.1.S1_at10/117+8700816..8704304expressed protein
LOC_Os07g15160Os.50367.1.A1_at6/117+8700816..8704304expressed protein
LOC_Os07g15160Os.52566.1.S1_at1/117+8700816..8704304expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28454.2.S1_at--39--10331Chr07:8679945..8679968 (24 bp)
TTTAGGAACCGGGATGGCACAACGC
LOC_Os07g15130
OsAffx.28454.2.S1_at--264--10091NONE
TAGGAACCGGGATGGCACAACGCTA
NONE
OsAffx.28454.2.S1_at--350--951NONE
AGGAACCGGGATGGCACAACGCTAC
NONE
OsAffx.28454.2.S1_at--953--5431Chr07:8679950..8680392 (25 bp)
GAACCGGGATGGCACAACGCTACAT
LOC_Os07g15130
OsAffx.28454.2.S1_at--567--2611Chr07:8679951..8680393 (25 bp)
AACCGGGATGGCACAACGCTACATA
LOC_Os07g15130
OsAffx.28454.2.S1_at--856--4251Chr07:8679953..8680395 (25 bp)
CCGGGATGGCACAACGCTACATATA
LOC_Os07g15130
OsAffx.28454.2.S1_at--874--7651NONE
GGGATGGCACAACGCTACATATATA
NONE
OsAffx.28454.2.S1_at--1070--6231Chr07:8679957..8680399 (25 bp)
GATGGCACAACGCTACATATATAGA
LOC_Os07g15130
OsAffx.28454.2.S1_at--139--8251Chr07:8679960..8680402 (25 bp)
GGCACAACGCTACATATATAGAGTT
LOC_Os07g15130
OsAffx.28454.2.S1_at--369--3251Chr07:8680386..8680406 (21 bp)
CAACGCTACATATATAGAGTTACAA
LOC_Os07g15130
OsAffx.28454.2.S1_at--433--8913Chr07:8680505..8680938 (25 bp)
TGCAGACTAATTCAGGGGACTTCCT
LOC_Os07g15130
Target Sequence 
TTTAGGAACCGGGATGGCACAACGCTACATATATAGAGTTACAAGCTGCCAAAGAGCATTCCATGGTTCACTGTTTCGTA
TCAAGGCATGTGCTAAAATTAGTGAGCTGGTAGCCCAATCTGGCTGGTGCAGTGTACTTACATGCAGACTAATTCAGGGG
ACTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28454.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis