Browse Element(s) Details


OsAffx.28456.1.S1_at

Description tigr:9635.m01515
TID=OsAffx.28456.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1522010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15180NANA7+8750388..8752021transposon protein, putative, unclassified
LOC_Os07g15190NANA7+8755642..8756197fatty acid elongase 1, putative
LOC_Os07g15200NANA7+8758497..8759915hypothetical protein
LOC_Os07g15210OsAffx.22947.5.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.3.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.1.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.2.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210Os.25048.1.S1_at1/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.5.S1_at1/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210Os.46715.1.S1_x_at1/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15220OsAffx.28456.1.S1_at10/117+8771651..8774633hypothetical protein
LOC_Os07g15230Os.36470.1.S1_at2/117+8781823..8783501hypothetical protein
LOC_Os07g15240OsAffx.16279.1.S1_at11/117+8785598..8786055hypothetical protein
LOC_Os07g15250Os.54691.1.S1_x_at2/117+8788551..8792984Zinc knuckle family protein
LOC_Os07g15260OsAffx.19542.3.S1_x_at2/117+8795620..8799468retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28456.1.S1_at--498--10851Chr07:8774550..8774574 (25 bp)
TTGGCTTCGTCCAAGCCACGGCAGT
LOC_Os07g15220
OsAffx.28456.1.S1_at--83--471Chr07:8774512..8774536 (25 bp)
ATCTCGGCGCCGAGGATCTTGTGGC
LOC_Os07g15220
OsAffx.28456.1.S1_at--192--10471Chr07:8774484..8774508 (25 bp)
TTACCCCTCTGAACACTCGCTAGAG
LOC_Os07g15220
OsAffx.28456.1.S1_at--75--8531Chr07:8774364..8774388 (25 bp)
TGGAACTGCCGAGGGTCTGCACTGC
LOC_Os07g15220
OsAffx.28456.1.S1_at--817--7791NONE
GGTCTGCACTGCTCGAAGAGACGAT
NONE
OsAffx.28456.1.S1_at--54--1891Chr07:8772779..8772803 (25 bp)
ACGATTGGGCAAGGCCAATCTGCCA
LOC_Os07g15220
OsAffx.28456.1.S1_at--700--3051Chr07:8772763..8772787 (25 bp)
AATCTGCCACTCTGCAAGAGCAAGC
LOC_Os07g15220
OsAffx.28456.1.S1_at--22--3391Chr07:8772730..8772754 (25 bp)
CAGCCCATCAAGGTGTTGAGACCAA
LOC_Os07g15220
OsAffx.28456.1.S1_at--734--6451Chr07:8772670..8772694 (25 bp)
GATCACACATACACACGACTGTCGG
LOC_Os07g15220
OsAffx.28456.1.S1_at--275--1851Chr07:8772659..8772680 (22 bp)
ACGACTGTCGGCCAAGATGCCGATT
LOC_Os07g15220
OsAffx.28456.1.S1_at--296--2251Chr07:8771989..8772013 (25 bp)
AAATTTTTGGCGAGTGGCTTTGCAG
LOC_Os07g15220
Target Sequence 
TTGGCTTCGTCCAAGCCACGGCAGTGCCGGAGGGGAAGATCTCGGCGCCGAGGATCTTGTGGCTGCTTACCCCTCTGAAC
ACTCGCTAGAGGAAGACGGTTGGGAAGCTGTGGATTGGGGAGTGATGAAAGGCGGTGGAGGTNGNNNGNNANNNNGAGCT
GTGTGGTGGAGGCGGCGGCGACGGCGTGGAACTGCCGAGGGTCTGCACTGCTCGAAGAGACGATTGGGCAAGGCCAATCT
GCCACTCTGCAAGAGCAAGCCTAACCACCAGCCCATCAAGGTGTTGAGACCAATCTTAATTCATGGATTAATGCCATTAT
ATAATGCCGATCACACATACACACGACTGTCGGCCAAGATGCCGATTATTGGTTTGATATTTGGAAATTTTTGGCGAGTG
GCTTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis