Browse Element(s) Details


OsAffx.28465.1.S1_at

Description tigr:9635.m01567
TID=OsAffx.28465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1573011/11hypothetical protein
LOC_Os04g174501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15680Os.5744.1.S1_at11/117+9103800..9111224Phospholipase D beta 1, putative, expressed
LOC_Os07g15690OsAffx.22421.3.S1_at11/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15690OsAffx.22421.2.S1_at2/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15700Os.46610.1.A1_x_at11/117+9123209..9123736hypothetical protein
LOC_Os07g15710Os.27435.1.S1_x_at3/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_x_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.22896.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.940.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15720NANA7+9135235..9135654hypothetical protein
LOC_Os07g15730OsAffx.28465.1.S1_at11/117+9135942..9136301hypothetical protein
LOC_Os07g15730OsAffx.16451.1.S1_x_at1/117+9135942..9136301hypothetical protein
LOC_Os07g15740OsAffx.22699.1.S1_x_at1/117+9136573..9140791retrotransposon protein, putative, unclassified
LOC_Os07g15750NANA7+9141074..9142072retrotransposon protein, putative, unclassified
LOC_Os07g15760OsAffx.3761.1.S1_x_at1/117+9142468..9145663hypothetical protein
LOC_Os07g15770OsAffx.28467.1.S1_at11/117+9150707..9153490CCT motif family protein
LOC_Os07g15770Os.56275.1.S1_x_at1/117+9150707..9153490CCT motif family protein
LOC_Os07g15780OsAffx.19542.3.S1_x_at5/117+9159146..9162873retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28465.1.S1_at--1066--47315Chr12:9223668..9223692 (25 bp)
GCTGAACGATTTGCTGTCTTAACGG
NONE
OsAffx.28465.1.S1_at--114--25917Chr12:18412294..18412630 (25 bp)
AACGATTTGCTGTCTTAACGGCGCC
NONE
OsAffx.28465.1.S1_at--411--6537Chr06:8688003..8688022 (20 bp)
GATTTGCTGTCTTAACGGCGCCTAC
NONE
OsAffx.28465.1.S1_at--262--10691Chr07:9136237..9136261 (25 bp)
TTGCTGTCTTAACGGCGCCTACTGA
LOC_Os07g15730
OsAffx.28465.1.S1_at--1146--9471Chr07:9136231..9136255 (25 bp)
TCTTAACGGCGCCTACTGAATTGGC
LOC_Os07g15730
OsAffx.28465.1.S1_at--365--3931Chr07:9136225..9136249 (25 bp)
CGGCGCCTACTGAATTGGCCGCGGA
LOC_Os07g15730
OsAffx.28465.1.S1_at--889--7031Chr07:9136142..9136166 (25 bp)
GTACAACCTGCTGAATCAGGAGTGT
LOC_Os07g15730
OsAffx.28465.1.S1_at--78--3495Chr09:4012555..4012574 (20 bp)
CAGGAGTGTCTGTTGAATCGGCTGC
NONE
OsAffx.28465.1.S1_at--7--1491Chr07:9136057..9136081 (25 bp)
AGCAACCTGATCCTGCATCAGCCGA
LOC_Os07g15730
OsAffx.28465.1.S1_at--628--8851Chr07:9136050..9136074 (25 bp)
TGATCCTGCATCAGCCGATTCGCAA
LOC_Os07g15730
OsAffx.28465.1.S1_at--204--9831Chr07:9135994..9136018 (25 bp)
TAACAACCCTCACCAGCTGGCCTGG
LOC_Os07g15730
Target Sequence 
GCTGAACGATTTGCTGTCTTAACGGCGCCTACTGAATTGGCCGCGGAGGCTGTTGCCTTGGTGGCGTTTGCTGAACTAGT
TGCACAACTTGTTGCTGGATTGGTTGTACAACCTGCTGAATCAGGAGTGTCTGTTGAATCGGCTGCTGCTGTATTGGATC
AACAGCATATTGAGGCGGCAGAAACGTGGCAGCAACCTGATCCTGCATCAGCCGATTCGCAACCTGCCCACTATGCTGTG
GCTGCTCTCTCATTAACAACCCTCACCAGCTGGCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis