Browse Element(s) Details


OsAffx.28501.1.S1_x_at

Description tigr:9635.m01826
TID=OsAffx.28501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1812011/11Aldehyde oxidase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18100OsAffx.31780.3.S1_at9/117+10708905..10711013hypothetical protein
LOC_Os07g18100OsAffx.31780.2.S1_x_at1/117+10708905..10711013hypothetical protein
LOC_Os07g18110OsAffx.16320.1.S1_at11/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.30891.1.S1_x_at3/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.12244.1.S1_at1/117+10714746..10716928hypothetical protein
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18130OsAffx.28502.1.S1_at11/117+10737453..10742218hypothetical protein
LOC_Os07g18140OsAffx.28503.1.S1_at11/117+10742802..10743391hypothetical protein
LOC_Os07g18154OsAffx.28504.1.S1_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_x_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_at10/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28501.1.S1_x_at--902--211Chr07:10734742..10734766 (25 bp)
ATTTGTCAGCGAGCGCGTACTGGGT
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--859--6991Chr07:10734758..10734782 (25 bp)
GTACTGGGTACCTGAGCAAGACTCG
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--532--8891Chr07:10734922..10734946 (25 bp)
TGAGGTTGATCTTCTTACTGGAGCA
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--277--7411Chr07:10734963..10734987 (25 bp)
GTGATCTTATCTACGACTGTGGCAA
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--533--2352Chr07:10734987..10735011 (25 bp)
AAAGCTTGAATCCTGCTGTAGACTT
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--753--6792Chr07:10764670..10764694 (25 bp)
GTTATTAGCAACAGCACCTGGGACT
NONE
OsAffx.28501.1.S1_x_at--526--9851Chr07:10735593..10735617 (25 bp)
TACAAGATTCCAAGCGTCGACACCA
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--271--1511Chr07:10735663..10735686 (24 bp)
AGCACCGTGTGCTTTCTTCAAAAGC
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--527--9691Chr07:10735680..10735788 (25 bp)
TCAAAAGCTTCTGGTGAACCTGCCG
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--5--8591Chr07:10735789..10735813 (25 bp)
TGGTTCTTGGAGCATCTGTCCATTG
LOC_Os07g18120
OsAffx.28501.1.S1_x_at--101--1231Chr07:10735875..10735899 (25 bp)
AGTTCATTACTCACATTTCAGCTTG
LOC_Os07g18120
Target Sequence 
ATTTGTCAGCGAGCGCGTACTGGGTACCTGAGCAAGACTCGAACTTTTATTTGAACTATGGAGCTGGTACAAGTGAGGTT
GAGGTTGATCTTCTTACTGGAGCAATTACCATAATAAGGAGTGATCTTATCTACGACTGTGGCAAAAGCTTGAATCCTGC
TGTAGACTTGGGGCAGATTGAAGGTTCATTTATACAAGGAATTGGTTTCTTCATCTATGAAGAACACCAGACGAACAGTG
ACGGTCTGGTTATTAGCAACAGCACCTGGGACTACAAGATTCCAAGCGTCGACACCATCCCGAAGCAATTCAACGCAGAG
GTGCTGAACACTGGATATCATAAGCACCGTGTGCTTTCTTCAAAAGCTTCTGGTGAACCTGCCGTGGTTCTTGGAGCATC
TGTCCATTGTGCGGTGAGAGAAGCAATCCGAGCAGCAAGGATAGAGTTTGCAGGCAACAATGGATCTGGAAGTTCATTAC
TCACATTTCAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28501.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis