Browse Element(s) Details


OsAffx.28506.1.S1_at

Description tigr:9635.m01846
TID=OsAffx.28506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g183006/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18250Os.52547.1.S1_at11/117+10815655..10823387expressed protein
LOC_Os07g18250Os.52547.2.S1_at10/117+10815655..10823387expressed protein
LOC_Os07g18260OsAffx.22274.2.S1_at11/117+10823919..10825307hypothetical protein
LOC_Os07g18270OsAffx.31892.5.S1_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.1.S1_x_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.5.S1_x_at1/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18280Os.47114.1.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18280Os.46314.2.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18290OsAffx.28505.1.S1_at11/117+10835974..10837754transposon protein, putative, unclassified, expressed
LOC_Os07g18300OsAffx.28506.1.S1_at6/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.25508.1.S1_at1/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.3516.1.S1_x_at1/117+10840254..10845791expressed protein
LOC_Os07g18310NANA7+10849577..10850663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18320OsAffx.22759.1.S1_at3/117+10851713..10855144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18320Os.36476.1.S1_at1/117+10851713..10855144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18320OsAffx.22759.2.S1_at1/117+10851713..10855144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18330NANA7+10857312..10858304hypothetical protein
LOC_Os07g18340NANA7+10864746..10868199retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18350NANA7+10870294..10873223retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28506.1.S1_at--937--151Chr07:10841016..10841037 (22 bp)
ATTTTGGACCTTGCCACAGTGGATC
LOC_Os07g18300
OsAffx.28506.1.S1_at--341--9651Chr07:10840900..10840924 (25 bp)
TCAGCTGGTATCACCCCTGGAAAAA
LOC_Os07g18300
OsAffx.28506.1.S1_at--548--7871Chr07:10840861..10840885 (25 bp)
GGTTAGGCGCACATTTTCAAAGATT
LOC_Os07g18300
OsAffx.28506.1.S1_at--294--5891Chr07:10840683..10840845 (25 bp)
GAGCGGTTGTATTTACCAGTCCTAA
LOC_Os07g18300
OsAffx.28506.1.S1_at--558--9151Chr07:10840625..10840649 (25 bp)
TGCGCAGCCGCATTGTGCAGATATA
LOC_Os07g18300
OsAffx.28506.1.S1_at--101--2831Chr07:10840452..10840476 (25 bp)
AAGTTGCTCTTGACACGGGAACGAA
LOC_Os07g18300
OsAffx.28506.1.S1_at--127--1191NONE
AGTAGAACTATATGCCACCCTGATA
NONE
OsAffx.28506.1.S1_at--456--391Chr07:10839672..10839696 (25 bp)
ATCAGTGTTTGGCAGCAACCCAGGT
NONE
OsAffx.28506.1.S1_at--1096--6892Chr07:10839535..10839559 (25 bp)
GTATCAGCCCTCACAAATACTGGTA
NONE
OsAffx.28506.1.S1_at--269--1731Chr07:10839511..10839535 (25 bp)
ACCAGTGTCTGGTGCCTGACAGCAA
NONE
OsAffx.28506.1.S1_at--760--6971Chr07:10839474..10839498 (25 bp)
GTACCAAGTCTGTTACCTGGCAGTA
NONE
Target Sequence 
ATTTTGGACCTTGCCACAGTGGATCAGCTGGTATCACCCCTGGAAAAATGTTGTGATGCCAAGGTTAGGCGCACATTTTC
AAAGATTGATTTGAAACTAATTGAGCGGTTGTATTTACCAGTCCTAAAGGAACATCACTGGTTCCTTATCGCCATCAACT
TGCGCAGCCGCATTGTGCAGATATACGACTCAATCCGGAATCAAAACAACCTCCAAGTTGCTCTTGACACGGGAACGAAT
AGTAGCCCATTTGGATTTGGTGACTTATCCACAGTCGAGTACCCTGAAACCCCTTACCAAGTAGAACTATATGCCACCCT
GATACAGTGTCTGATGCCTATCAGTGTTTGGCAGCAACCCAGGTACCAGGCCTGTAACCCCAAGTACCAGGCACCAGTAT
CAGCCCTCACAAATACTGGTACCAGTGTCTGGTGCCTGACAGCAACCCAGGTACCAGGTACCAAGTCTGTTACCTGGCAG
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis