Browse Element(s) Details


OsAffx.28550.1.S1_x_at

Description tigr:9635.m02210
TID=OsAffx.28550.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2324411/11ribosomal protein L23 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23260OsAffx.28551.1.S1_at11/117+13103030..13104247hypothetical protein
LOC_Os07g23270Os.43636.1.S1_at10/117+13113625..13118366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23280OsAffx.1309.1.S1_at11/117+13120759..13121409transposon protein, putative, unclassified
LOC_Os07g23290OsAffx.8372.1.S1_at4/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23290OsAffx.8371.1.S1_at3/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28550.1.S1_x_at--813--2071Chr07:13101066..13101090 (25 bp)
ACATTGGCTCTCACTGGCGCTTTTG
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--666--10871Chr07:13101069..13101093 (25 bp)
TTGGCTCTCACTGGCGCTTTTGCTG
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--541--9691Chr07:13101076..13101100 (25 bp)
TCACTGGCGCTTTTGCTGGAGAGCT
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--186--4131Chr07:13101083..13101549 (25 bp)
CGCTTTTGCTGGAGAGCTGGAAACA
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--71--1371Chr07:13101095..13101561 (25 bp)
AGAGCTGGAAACAGCAGTATGCCCC
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--699--5531Chr07:13101544..13101568 (25 bp)
GAAACAGCAGTATGCCCCCAAGAAG
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--14--2751Chr07:13101566..13101590 (25 bp)
AAGAAGGGCATAGTCCTGAAGCAGA
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--207--8291Chr07:13101572..13101596 (25 bp)
GGCATAGTCCTGAAGCAGAAGTCAT
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--221--10011Chr07:13101576..13101600 (25 bp)
TAGTCCTGAAGCAGAAGTCATGGAA
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--671--5331Chr07:13101589..13101613 (25 bp)
GAAGTCATGGAAGGGATCCGTGCAT
LOC_Os07g23244
OsAffx.28550.1.S1_x_at--955--8191Chr07:13101597..13101621 (25 bp)
GGAAGGGATCCGTGCATCGGCAACC
LOC_Os07g23244
Target Sequence 
ACATTGGCTCTCACTGGCGCTTTTGCTGGAGAGCTGGAAACAGCAGTATGCCCCCAAGAAGAAGGGCATAGTCCTGAAGC
AGAAGTCATGGAAGGGATCCGTGCATCGGCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28550.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis