Browse Element(s) Details


OsAffx.28583.1.S1_at

Description tigr:9635.m02454
TID=OsAffx.28583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2560011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25560Os.27639.1.S1_x_at2/117+14650824..14654074retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25570OsAffx.28581.1.S1_at10/117+14656853..14659257hypothetical protein
LOC_Os07g25570OsAffx.21066.1.S1_x_at2/117+14656853..14659257hypothetical protein
LOC_Os07g25580NANA7+14662211..14662519hypothetical protein
LOC_Os07g25590Os.49621.1.S1_at11/117+14666320..14675013Tyrosine decarboxylase 1, putative, expressed
LOC_Os07g25600OsAffx.28583.1.S1_at11/117+14675821..14676258hypothetical protein
LOC_Os07g25610OsAffx.16407.2.S1_x_at1/117+14678204..14678829hypothetical protein
LOC_Os07g25620NANA7+14681982..14686254retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.16451.1.A1_x_at3/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630Os.45161.1.A1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.22699.1.S1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.16451.1.A1_at1/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25640NANA7+14697164..14700360hypothetical protein
LOC_Os07g25650Os.46303.1.S1_x_at1/117+14700817..14707194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28583.1.S1_at--93--9171Chr07:14675918..14675942 (25 bp)
TGCCCGACTCGTTGCAGCCGTGTCG
LOC_Os07g25600
OsAffx.28583.1.S1_at--596--1131Chr07:14675961..14675985 (25 bp)
AGTGCTACGTCGACAGCTGCGCGGA
LOC_Os07g25600
OsAffx.28583.1.S1_at--603--6251Chr07:14675984..14676008 (25 bp)
GATGGGCGACGGGAGCTGACGCTGG
LOC_Os07g25600
OsAffx.28583.1.S1_at--533--7571Chr07:14676022..14676046 (25 bp)
GGGCGATGGCGGCAGACTCCAGCGG
LOC_Os07g25600
OsAffx.28583.1.S1_at--1033--951Chr07:14676056..14676080 (25 bp)
AGGACGATGAAAGCGGCGGCCGAGC
LOC_Os07g25600
OsAffx.28583.1.S1_at--1038--1851Chr07:14676096..14676120 (25 bp)
ACGACTGCGCAGACGGGCGACAGGA
LOC_Os07g25600
OsAffx.28583.1.S1_at--1089--5651Chr07:14676114..14676138 (25 bp)
GACAGGAGCTGACGCCAGCGGGTGC
LOC_Os07g25600
OsAffx.28583.1.S1_at--523--1631Chr07:14676130..14676154 (25 bp)
AGCGGGTGCACGGACGGGCGAAGAA
LOC_Os07g25600
OsAffx.28583.1.S1_at--473--1791Chr07:14676187..14676211 (25 bp)
ACCGCGCGGCCGAGAGAAGTCGCCA
LOC_Os07g25600
OsAffx.28583.1.S1_at--943--8411Chr07:14676194..14676218 (25 bp)
GGCCGAGAGAAGTCGCCAGAAATCT
LOC_Os07g25600
OsAffx.28583.1.S1_at--660--5331Chr07:14676202..14676226 (25 bp)
GAAGTCGCCAGAAATCTTGCTGAAT
LOC_Os07g25600
Target Sequence 
TGCCCGACTCGTTGCAGCCGTGTCGGCACGGGCACCGACGTCGAGTGCTACGTCGACAGCTGCGCGGATGGGCGACGGGA
GCTGACGCTGGTGGGCGCGCGGATGGGCGATGGCGGCAGACTCCAGCGGGCAAGTGGAAGGACGATGAAAGCGGCGGCCG
AGCGGGGGAGCAGTGGCGACGACTGCGCAGACGGGCGACAGGAGCTGACGCCAGCGGGTGCACGGACGGGCGAAGAAAGC
GGCAGCCGAGCGGGGAAGCAGCGGCGACGACCGCGCGGCCGAGAGAAGTCGCCAGAAATCTTGCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis