Browse Element(s) Details


OsAffx.28587.1.S1_at

Description tigr:9635.m02476
TID=OsAffx.28587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2580011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25760Os.27034.1.A1_at5/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25760OsAffx.5441.1.S1_at4/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25770OsAffx.5440.1.S1_at11/117+14807179..14807499hypothetical protein
LOC_Os07g25780OsAffx.5441.1.S1_at11/117+14808994..14809500hypothetical protein
LOC_Os07g25790NANA7+14816298..14816803hypothetical protein
LOC_Os07g25800OsAffx.28587.1.S1_at11/117+14819084..14820554F-box domain containing protein, expressed
LOC_Os07g25810Os.6042.1.S1_at11/117+14822373..14823930transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g25820OsAffx.28588.1.S1_at11/117+14825961..14826463hypothetical protein
LOC_Os07g25830OsAffx.5443.1.S1_at11/117+14828639..14829619hypothetical protein
LOC_Os07g25840NANA7+14835046..14838771retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25850Os.24831.1.S1_x_at8/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.3.S1_s_at6/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.3.S1_x_at5/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.4.S1_x_at2/117+14843400..14845300retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28587.1.S1_at--494--1791Chr07:14820225..14820249 (25 bp)
ACCGCGTCTACTTCGCGGACAAGGT
LOC_Os07g25800
OsAffx.28587.1.S1_at--452--1051Chr07:14820246..14820270 (25 bp)
AGGTGAGCTGCTTCGCGCGGGAGTC
LOC_Os07g25800
OsAffx.28587.1.S1_at--136--4631Chr07:14820262..14820286 (25 bp)
GCGGGAGTCGAACCGGAGGCTGACC
LOC_Os07g25800
OsAffx.28587.1.S1_at--1062--4031Chr07:14820297..14820321 (25 bp)
CGTTCGACGTCAAGAGCGGGAGCCT
LOC_Os07g25800
OsAffx.28587.1.S1_at--751--8171Chr07:14820333..14820357 (25 bp)
GGAAGGACGGCGCTGGTGATGACCC
LOC_Os07g25800
OsAffx.28587.1.S1_at--47--10271Chr07:14820386..14820410 (25 bp)
TTTGCGCCGCCTTATTTTTTCCGAT
LOC_Os07g25800
OsAffx.28587.1.S1_at--708--4211Chr07:14820392..14820416 (25 bp)
CCGCCTTATTTTTTCCGATGATCTG
LOC_Os07g25800
OsAffx.28587.1.S1_at--536--9291Chr07:14820405..14820429 (25 bp)
TCCGATGATCTGAAAACGTCCTGGT
LOC_Os07g25800
OsAffx.28587.1.S1_at--440--2371Chr07:14820418..14820442 (25 bp)
AAACGTCCTGGTATTAGTGCCAATG
LOC_Os07g25800
OsAffx.28587.1.S1_at--383--10071Chr07:14820432..14820456 (25 bp)
TAGTGCCAATGATCTAGCTAATTAG
LOC_Os07g25800
OsAffx.28587.1.S1_at--22--171Chr07:14820497..14820521 (25 bp)
ATTATTTTATTTTGTGTCACGTTTG
LOC_Os07g25800
Target Sequence 
ACCGCGTCTACTTCGCGGACAAGGTGAGCTGCTTCGCGCGGGAGTCGAACCGGAGGCTGACCGGCGTCGGGACGTTCGAC
GTCAAGAGCGGGAGCCTGGAGATGCTGTGGAAGGACGGCGCTGGTGATGACCCGCTGGAGGCCTGCCGGGCGCCGACGTG
GTTTGCGCCGCCTTATTTTTTCCGATGATCTGAAAACGTCCTGGTATTAGTGCCAATGATCTAGCTAATTAGAGTACTAG
ATAGATTATATAGATTATTAGATTTCTAGTTTATTATTTTATTTTGTGTCACGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis