Browse Element(s) Details


OsAffx.28670.2.S1_at

Description tigr:9635.m02943
TID=OsAffx.28670.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3015011/11Adenine phosphoribosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30110Os.52110.1.S1_at11/117+17765848..17769687expressed protein
LOC_Os07g30120Os.27433.1.S1_at9/117+17770977..17774813hypothetical protein
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28670.2.S1_at--310--3811Chr07:17798127..17798151 (25 bp)
CTCCGTTGTTGCTGGTAACATATAA
LOC_Os07g30150
OsAffx.28670.2.S1_at--233--6671Chr07:17798120..17798144 (25 bp)
GTTGCTGGTAACATATAATTGTTTT
LOC_Os07g30150
OsAffx.28670.2.S1_at--1065--6531Chr07:17798064..17798088 (25 bp)
GATTTATTTGAACTTGTGCGCTTTG
LOC_Os07g30150
OsAffx.28670.2.S1_at--796--191Chr07:17798059..17798083 (25 bp)
ATTTGAACTTGTGCGCTTTGTTTAT
LOC_Os07g30150
OsAffx.28670.2.S1_at--719--7291Chr07:17798049..17798073 (25 bp)
GTGCGCTTTGTTTATTCAAGTACTC
LOC_Os07g30150
OsAffx.28670.2.S1_at--1062--10251Chr07:17798043..17798067 (25 bp)
TTTGTTTATTCAAGTACTCCATCCG
LOC_Os07g30150
OsAffx.28670.2.S1_at--144--1851Chr07:17797849..17797873 (25 bp)
ACGAATGTTCAAACAGTACAAGTAA
LOC_Os07g30150
OsAffx.28670.2.S1_at--479--6131Chr07:17797795..17797819 (25 bp)
GAGGGAGTAGTAACTAATCTGATCT
LOC_Os07g30150
OsAffx.28670.2.S1_at--406--6931Chr07:17797789..17797813 (25 bp)
GTAGTAACTAATCTGATCTTTATCT
LOC_Os07g30150
OsAffx.28670.2.S1_at--674--10171Chr07:17797756..17797780 (25 bp)
TATCAGATCTTATCAAATCCATTGA
LOC_Os07g30150
OsAffx.28670.2.S1_at--291--3431Chr07:17797701..17797725 (25 bp)
CAGAGTTATTATTTATGAAGATCCA
LOC_Os07g30150
Target Sequence 
CTCCGTTGTTGCTGGTAACATATAATTGTTTTGTTTTTTATCTCAAAAAATTGAAAAAATCAAGATTTATTTGAACTTGT
GCGCTTTGTTTATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCTTGCACTGTTTTGATC
ACTCGTCTTATTAAAAAAAATTGTGCAAATATAAAAACGAAAAGTTGTGTTTAAAGTACTTTGAGTAATAAAGTAAGTCA
CAAATAAAATAAATAATAGTTTTAATTTTTTTAATAAGACGAATGTTCAAACAGTACAAGTAAAATGTCAAAATCTCTTA
TATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAATATCAGATCTTATCAAATCCATTGAAATA
TATAATTTATTTTTTTAATACTAAGTCAGAGTTATTATTTATGAAGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28670.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis