Browse Element(s) Details


OsAffx.28694.1.S1_at

Description tigr:9635.m03072
TID=OsAffx.28694.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3135011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28694.1.S1_at--421--1671Chr07:18573223..18573247 (25 bp)
ACCACACCGTCCTGAGAGTGAAAAC
LOC_Os07g31350
OsAffx.28694.1.S1_at--847--9971Chr07:18572978..18573002 (25 bp)
TACCTCCGCTAGTTGCCAGTGGAAG
LOC_Os07g31350
OsAffx.28694.1.S1_at--706--5551Chr07:18572953..18572977 (25 bp)
GAAATCCCAGGCTCGAGGTGGAAAT
LOC_Os07g31350
OsAffx.28694.1.S1_at--679--6911Chr07:18572889..18572913 (25 bp)
GTAGTTAGCCAGCAGTTTTTCCCGC
LOC_Os07g31350
OsAffx.28694.1.S1_at--952--5131Chr07:18572852..18572876 (25 bp)
GCAAAGTTGCGCATTTACCGTATAA
LOC_Os07g31350
OsAffx.28694.1.S1_at--84--2811Chr07:18572612..18572636 (25 bp)
AAGATCTATGGATACCCCTGGAGCA
LOC_Os07g31350
OsAffx.28694.1.S1_at--460--111Chr07:18571539..18571558 (20 bp)
ATTAAAGGTGAAGCCACCGGCCGAG
LOC_Os07g31350
OsAffx.28694.1.S1_at--32--6211Chr07:18571517..18571541 (25 bp)
GAGGCTCGTCCCAGGTATCTAGACA
LOC_Os07g31350
OsAffx.28694.1.S1_at--880--9471Chr07:18571500..18571524 (25 bp)
TCTAGACACATGTGACGGGCCGGCA
LOC_Os07g31350
OsAffx.28694.1.S1_at--715--2911Chr07:18571461..18571485 (25 bp)
AAGGATACCTCTGTCAGGTGCCAGT
LOC_Os07g31350
OsAffx.28694.1.S1_at--29--6991Chr07:18571129..18571153 (25 bp)
GTACGGTATTGATAGTTGGTCCCAA
LOC_Os07g31350
Target Sequence 
ACCACACCGTCCTGAGAGTGAAAACNNNCGATTCGAGGGAGGTTGGGGAGGCTACCTACCTCCGCTAGTTGCCAGTGGAA
GGAAATCCCAGGCTCGAGGTGGAAATGGAGCTTGTGGAAGGGTCGACGGCAGCAATGTAGGAATCGTAGTTAGCCAGCAG
TTTTTCCCGCCGGCGAGCCCCTGCAAAGTTGCGCATTTACCGTATAAANNNCTGATGGGGAGCAGGGGCGGATCCAACGT
GAGTGCAGGGGGGTTCGAGTCCCCCTGCACCCACAAGATCTATGGATACCCCTGGAGCACCCCCTTCAATTTTTTCACCA
TGAATGATAAATTAAAGGTGAAGCCACCGGCCGAGGCTCGTCCCAGGTATCTAGACACATGTGACGGGCCGGCACCCACA
CCTACCAGAAGGATACCTCTGTCAGGTGCCAGTGCAAGCCCATCACAGATGGACCAAAGTTGGATGTACGGTATTGATAG
TTGGTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis