Browse Element(s) Details


OsAffx.28698.1.S1_at

Description tigr:9635.m03086
TID=OsAffx.28698.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3148011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31460Os.27566.1.S1_s_at11/117+18641388..18651889Transglutaminase-like superfamily protein, expressed
LOC_Os07g31470OsAffx.28697.1.S1_at11/117+18657061..18658623Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g31480OsAffx.28698.1.S1_at11/117+18671178..18672325hypothetical protein
LOC_Os07g31490Os.11511.2.S1_x_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.1.S1_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.2.S1_at10/117+18682814..18686196expressed protein
LOC_Os07g31490Os.52782.1.S1_at1/117+18682814..18686196expressed protein
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28698.1.S1_at--892--9151Chr07:18671260..18671284 (25 bp)
TGCCCTCCTCGTCTAAAAGCTCTTT
LOC_Os07g31480
OsAffx.28698.1.S1_at--1104--4271Chr07:18671263..18671287 (25 bp)
CCTCCTCGTCTAAAAGCTCTTTTGC
LOC_Os07g31480
OsAffx.28698.1.S1_at--810--9391Chr07:18671268..18671292 (25 bp)
TCGTCTAAAAGCTCTTTTGCCAGAT
LOC_Os07g31480
OsAffx.28698.1.S1_at--626--2431Chr07:18671274..18671298 (25 bp)
AAAAGCTCTTTTGCCAGATTAGGTT
LOC_Os07g31480
OsAffx.28698.1.S1_at--882--9191Chr07:18671285..18671309 (25 bp)
TGCCAGATTAGGTTCATCCGCATCT
LOC_Os07g31480
OsAffx.28698.1.S1_at--653--6551Chr07:18671290..18671314 (25 bp)
GATTAGGTTCATCCGCATCTGTGAC
LOC_Os07g31480
OsAffx.28698.1.S1_at--642--7891Chr07:18671295..18671319 (25 bp)
GGTTCATCCGCATCTGTGACACCTA
LOC_Os07g31480
OsAffx.28698.1.S1_at--149--551Chr07:18671300..18671324 (25 bp)
ATCCGCATCTGTGACACCTACAAGG
LOC_Os07g31480
OsAffx.28698.1.S1_at--972--4971Chr07:18671304..18671328 (25 bp)
GCATCTGTGACACCTACAAGGCTAC
LOC_Os07g31480
OsAffx.28698.1.S1_at--535--9471Chr07:18671307..18671331 (25 bp)
TCTGTGACACCTACAAGGCTACCGA
LOC_Os07g31480
OsAffx.28698.1.S1_at--203--9851Chr07:18671318..18671342 (25 bp)
TACAAGGCTACCGACAAGGAGCTCG
LOC_Os07g31480
Target Sequence 
TGCCCTCCTCGTCTAAAAGCTCTTTTGCCAGATTAGGTTCATCCGCATCTGTGACACCTACAAGGCTACCGACAAGGAGC
TCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis