Browse Element(s) Details


OsAffx.28736.2.S1_at

Description tigr:9631.m04175
TID=OsAffx.28736.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4330910/11hypothetical protein
LOC_Os02g424601/11hypothetical protein
LOC_Os07g341001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43250NANA3+24068965..24074157retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g43270OsAffx.22699.1.S1_x_at1/113+24076018..24080418retrotransposon protein, putative, unclassified
LOC_Os03g43270OsAffx.13786.1.S1_x_at1/113+24076018..24080418retrotransposon protein, putative, unclassified
LOC_Os03g43270OsAffx.18957.1.S1_at1/113+24076018..24080418retrotransposon protein, putative, unclassified
LOC_Os03g43280Os.45976.1.S1_x_at5/113+24084169..24087861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43290Os.46306.1.S1_x_at4/113+24090242..24094588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43309OsAffx.28736.2.S1_at10/113+24097420..24099895hypothetical protein
LOC_Os03g43309OsAffx.31510.1.S1_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43309Os.36476.1.S1_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43309OsAffx.27681.1.S1_x_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_x_at9/113+24108594..24111062hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_at8/113+24108594..24111062hypothetical protein
LOC_Os03g43340OsAffx.22604.1.S1_x_at2/113+24114851..24116388hypothetical protein
LOC_Os03g43350OsAffx.25511.1.S1_at11/113+24123273..24125821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28736.2.S1_at--468--3611Chr03:24097462..24097485 (24 bp)
CATTGGCTTTCACAACGAGAAGAGT
LOC_Os03g43309
OsAffx.28736.2.S1_at--278--5611Chr03:24098021..24098045 (25 bp)
GACAATATTCCTGTGCCTTCTATTA
LOC_Os03g43309
OsAffx.28736.2.S1_at--938--1374Chr07:20386870..20387374 (25 bp)
AGAGCGTTTCAGATATGAATCCTCC
LOC_Os07g34100
OsAffx.28736.2.S1_at--476--4731Chr03:24098735..24098759 (25 bp)
GCTGTGCACTGTTAACTTCGAAGGT
LOC_Os03g43309
OsAffx.28736.2.S1_at--1150--6751Chr03:24098745..24098769 (25 bp)
GTTAACTTCGAAGGTCAAGTCTCGC
LOC_Os03g43309
OsAffx.28736.2.S1_at--916--9591NONE
TCATTCAGTACGTGTTCTCTCGTTT
NONE
OsAffx.28736.2.S1_at--412--3431Chr03:24099565..24099589 (25 bp)
CAGAGATCATCAAATGCGCGTCACG
LOC_Os03g43309
OsAffx.28736.2.S1_at--478--6611Chr03:24099790..24099811 (22 bp)
GTTGGGACGTGATTCAAAATCCACA
LOC_Os03g43309
OsAffx.28736.2.S1_at--530--2273Chr03:24099803..24099827 (25 bp)
AAATCCACATTGAGAGACCTAAAGT
LOC_Os03g43309
OsAffx.28736.2.S1_at--1087--5831Chr03:24099818..24099842 (25 bp)
GACCTAAAGTGGACTTATTTCCCAG
LOC_Os03g43309
OsAffx.28736.2.S1_at--1121--191Chr03:24099834..24099858 (25 bp)
ATTTCCCAGCAAAATCAGTCGCTTC
LOC_Os03g43309
Target Sequence 
CATTGGCTTTCACAACGAGAAGAGTTACTTCTGCTTGCTTGCGATATTGAAAGTCAGATTGAGAAAGAAACAAAAATAGC
TATGATACATGACAATATTCCTGTGCCTTCTATTATATCTAACATCGTGCAGGAAGGTAAAAACAATTTTGAAGAAAAGA
AGAATGAAGCACCTAAATTTGGTCAAGAGAGCGTTTCAGATATGAATCCTCCTTTAAATATGGAAAAATATGAGAAACCA
AATGGATTGCACAACGTTGATGCTATTGGGATAAATTCACCTAACGTTGTTTTAAATATCGATGACAATATTCAAGAAGG
TGAGTGCTGTGCACTGTTAACTTCGAAGGTCAAGTCTCGCTATCATTTTAAGACATATTCATTCAGTACGTGTTCTCTCG
TTTGCATTGCAGAGATCATCAAATGCGCGTCACGGTTGGGACGTGATTCAAAATCCACATTGAGAGACCTAAAGTGGACT
TATTTCCCAGCAAAATCAGTCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28736.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis