Browse Element(s) Details


OsAffx.2883.1.S1_at

Description tigr:9630.m03502
TID=OsAffx.2883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36619Os.54149.1.S1_at11/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36619Os.47073.1.S1_at1/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein
LOC_Os02g36690OsAffx.12376.1.S1_x_at9/112+22138388..22139129hypothetical protein
LOC_Os02g36690OsAffx.12376.1.S1_at6/112+22138388..22139129hypothetical protein
LOC_Os02g36690Os.52986.1.S2_at1/112+22138388..22139129hypothetical protein
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2883.1.S1_at--953--9291Chr02:22130990..22131014 (25 bp)
TCCCCCGGTCGTTGATCGGAGGCCG
LOC_Os02g36670
OsAffx.2883.1.S1_at--394--6451Chr02:22130944..22130968 (25 bp)
GATCAAACTTAATGCCACACAGATG
LOC_Os02g36670
OsAffx.2883.1.S1_at--316--9771Chr02:22130935..22130959 (25 bp)
TAATGCCACACAGATGCACAATCTT
LOC_Os02g36670
OsAffx.2883.1.S1_at--1010--4391Chr02:22130931..22130955 (25 bp)
GCCACACAGATGCACAATCTTAGGG
LOC_Os02g36670
OsAffx.2883.1.S1_at--973--3271Chr02:22129818..22129842 (25 bp)
CACAAATTCCCCTGCAGTTGGCACG
LOC_Os02g36670
OsAffx.2883.1.S1_at--1060--3431Chr02:22129804..22129828 (25 bp)
CAGTTGGCACGCCTGGAATGTCGTT
LOC_Os02g36670
OsAffx.2883.1.S1_at--490--5071Chr02:22129798..22129822 (25 bp)
GCACGCCTGGAATGTCGTTGGCCGC
LOC_Os02g36670
OsAffx.2883.1.S1_at--109--5031Chr02:22129760..22129784 (25 bp)
GCAGTGGCCGCAGTGTTGGCAGCAG
LOC_Os02g36670
OsAffx.2883.1.S1_at--945--5051Chr02:22129715..22129739 (25 bp)
GCAGCAGCAGATAATGCGAACGAAG
LOC_Os02g36670
OsAffx.2883.1.S1_at--912--9091Chr02:22129701..22129725 (25 bp)
TGCGAACGAAGCTGAAGGTTCCGGT
LOC_Os02g36670
OsAffx.2883.1.S1_at--858--5591Chr02:22129689..22129713 (25 bp)
TGAAGGTTCCGGTGGAAACAAGCAG
LOC_Os02g36670
Target Sequence 
TCCCCCGGTCGTTGATCGGAGGCCGCCCCCGCCCCATCCTGGAGCAGATCAAACTTAATGCCACACAGATGCACAATCTT
AGGGGCACAAATTCCCCTGCAGTTGGCACGCCTGGAATGTCGTTGGCCGCGGCGGCGGAGGTGGCAGTGGCCGCAGTGTT
GGCAGCAGCGGCAGCGAGAGCGGCATCAGCAGCAGCAGATAATGCGAACGAAGCTGAAGGTTCCGGTGGAAACAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis